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AT1G59218.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.987
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Disease resistance protein (CC-NBS-LRR class) family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: apoptosis, defense response; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G58848.2); Has 17671 Blast hits to 15071 proteins in 568 species: Archae - 4; Bacteria - 896; Metazoa - 587; Fungi - 110; Plants - 15906; Viruses - 0; Other Eukaryotes - 168 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4886eggNOG:KOG4658EMBL:AC027036EMBL:CP002684
EnsemblPlants:AT1G58848.1EnsemblPlants:AT1G58848.2EnsemblPlants:AT1G59218EnsemblPlants:AT1G59218.1
EnsemblPlants:AT1G59218.2entrez:842226entrez:842234ExpressionAtlas:P0DI18
Gene3D:3.40.50.300Gene3D:3.80.10.10GeneID:842226GeneID:842234
Genevisible:P0DI18GO:GO:0005524GO:GO:0006952GO:GO:0043531
Gramene:AT1G58848.1Gramene:AT1G58848.2Gramene:AT1G59218.1Gramene:AT1G59218.2
hmmpanther:PTHR23155hmmpanther:PTHR23155:SF549InParanoid:P0DI18InterPro:IPR002182
InterPro:IPR027417InterPro:IPR032675KEGG:ath:AT1G58848KEGG:ath:AT1G59218
ncoils:CoilPaxDb:P0DI18Pfam:P0DI17Pfam:P0DI18
Pfam:PF00931PhylomeDB:P0DI18PRO:PR:P0DI18ProteinModelPortal:P0DI18
Proteomes:UP000006548RefSeq:NP_001031207.1RefSeq:NP_001185265.1RefSeq:NP_176153.1
RefSeq:NP_683447.2SMR:P0DI18STRING:3702.AT1G59218.1SUPFAM:SSF52047
SUPFAM:SSF52058SUPFAM:SSF52540TAIR:AT1G59218UniGene:At.22095
UniGene:At.50577UniGene:At.70106UniProt:P0DI17UniProt:P0DI18
Coordinates (TAIR10) chr1:+:21828398..21831713
Molecular Weight (calculated) 121052.00 Da
IEP (calculated) 7.25
GRAVY (calculated) -0.31
Length 1049 amino acids
Sequence (TAIR10)
(BLAST)
0001: MAGELISFGI QNLWNLLSQE CELFQGVEDQ VTELKRDLNL LSSFLKDADA KKHTSAVVKN CVEEIKEIIY DGEDTIETFV LEQNLGKTSG IKKSIRRLAC
0101: IIPDRRRYAL GIGGLSNRIS KVIRDMQSFG VQQAIVDGGY KQPQGDKQRE MRPRFSKDDD SDFVGLEANV KKLVGYLVDE ANVQVVSITG MGGLGKTTLA
0201: KQVFNHEDVK HQFDGLSWVC VSQDFTRMNV WQKILRDLKP KEEEKKIMEM TQDTLQGELI RLLETSKSLI VLDDIWEKED WELIKPIFPP TKGWKVLLTS
0301: RNESVAMRRN TSYINFKPEC LTTEDSWTLF QRIALPMKDA AEFKIDEEKE ELGKLMIKHC GGLPLAIRVL GGMLAEKYTS HDWRRLSENI GSHLVGGRTN
0401: FNDDNNNTCN YVLSLSFEEL PSYLKHCFLY LAHFPDDYEI NVKNLSYYWA AEGIFQPRHY DGEIIRDVGD VYIEELVRRN MVISERDVKT SRFETCHLHD
0501: MMREVCLLKA KEENFLQITS SRTSTGNSLS IVTSRRLVYQ YPITLDVEKD INDPKLRSLV VVANTYMFWG GWSWMLLGSS FIRLELLRVL DIHRAKLKGG
0601: KLASSIGQLI HLRYLNLKHA EVTHIPYSLG NLKLLIYLNL VILVSGSTLV PNVLKEMQQL RYLALPKDMG RKTKLELSNL VKLETLKNFS TKNCSLEDLR
0701: GMVRLRTLTI ELRKETSLET LAASIGGLKY LESLTITDLG SEMRTKEAGI VFDFVYLKTL TLKLYMPRLS KEQHFPSHLT TLYLQHCRLE EDPMPILEKL
0801: HQLKELELRR KSFSGKEMVC SSGGFPQLQK LSIKGLEEWE DWKVEESSMP VLHTLDIRDC RKLKQLPDEH LPSHLTSISL FFCCLEEDPM PTLERLVHLK
0901: ELQLLFRSFS GRIMVCAGSG FPQLHKLKLS ELDGLEEWIV EDGSMPQLHT LEIRRCPKLK KLPNGFPQLQ NLELNELEEW EEWIVEDGSM PLLHTLRIWN
1001: CPKLKQLPDG LRFIYSLKNL TVPKRWKKRL SKGGEDYYKV QHIPSVEFY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)