AT1G58807.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.680 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (CC-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G59218.2); Has 16558 Blast hits to 15019 proteins in 550 species: Archae - 4; Bacteria - 833; Metazoa - 644; Fungi - 107; Plants - 14810; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:21780574..21783793 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 117054.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.58 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1017 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAGELISFGI QNLWNLLSQE CELFQGVEDQ VTELKRDLNM LSSFLKDANA KKHTSAVVKN CVEEIKEIIY DGEDTIETFV LEQNLGKTSG IKKSIRRLAC 0101: IIPDRRRYAL GIGGLSNRIS KVIRDMQSFG VQQAIVDGGY KQPQGDKQRE MRQKFSKDDD SDFVGLEANV KKLVGYLVDE ANVQVVSITG MGGLGKTTLA 0201: KQVFNHEDVK HQFDGLSWVC VSQDFTRMNV WQKILRDLKP KEEEKKIMEM TQDTLQGELI RLLETSKSLI VLDDIWEKED WELIKPIFPP TKGWKVLLTS 0301: RNESVAMRRN TSYINFKPEC LTTEDSWTLF QRIALPMKDA AEFKIDEEKE ELGKLMIKHC GGLPLAIRVL GGMLAEKYTS HDWRRLSENI GSHLVGGRTN 0401: FNDDNNNTCN NVLSLSFEEL PSYLKHCFLY LAHFPEDYEI KVENLSYYWA AEGIFQPRHY DGETIRDVGD VYIEELVRRN MVISERDVKT SRFETCHLHD 0501: MMREVCLLKA KEENFLQITS SRPSTANLQS TVTSRRFVYQ YPTTLHVEKD INNPKLRALV VVTLGSWNLA GSSFTRLELL RVLDLIEVKI KGGKLASCIG 0601: KLIHLRYLSL EYAEVTHIPY SLGNLKLLIY LNLASFGRST FVPNVLMGMQ ELRYLALPSD MGRKTKLELS NLVKLETLEN FSTENSSLED LCGMVRLSTL 0701: NIKLIEETSL ETLAASIGGL KYLEKLEIYD HGSEMRTKEA GIVFDFVHLK RLWLKLYMPR LSTEQHFPSH LTTLYLESCR LEEDPMPILE KLLQLKELEL 0801: GFESFSGKKM VCSSGGFPQL QRLSLLKLEE WEDWKVEESS MPLLRTLDIQ VCRKLKQLPD EHLPSHLTSI SLFFCCLEKD PLPTLGRLVY LKELQLGFRT 0901: FSGRIMVCSG GGFPQLQKLS IYRLEEWEEW IVEQGSMPFL HTLYIDDCPK LKKLPDGLQF IYSLKNLKIS ERWKERLSEG GEEYYKVQHI PSVEFYHRVL 1001: HIFRSVGGDI TGRLLMR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)