AT1G58100.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : TCP family transcription factor | ||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
TCP family transcription factor ; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor (TAIR:AT1G35560.1); Has 396 Blast hits to 390 proteins in 36 species: Archae - 0; Bacteria - 3; Metazoa - 45; Fungi - 2; Plants - 334; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). | ||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:21512680..21513885 | ||||||||
| Molecular Weight (calculated) | 39926.80 Da | ||||||||
| IEP (calculated) | 6.80 | ||||||||
| GRAVY (calculated) | -0.75 | ||||||||
| Length | 377 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MDLSDIRNNN NDTAAVATGG GARQLVDASL SIVPRSTPPE DSTLATTSST ATATTTKRST KDRHTKVDGR GRRIRMPALC AARVFQLTRE LGTGTIPANF 101: STLSVSLRSS GSTLSAPPSK SVPLYGALGL THHQYDEQGG GGVFAAHTSP LLGFHHQLQH HQNQNQNQDP VETIPEGENF SRKRYRSVDL SKENDDRKQN 201: ENKSLKESET SGPTAAPMWA VAPPSRSGAG NTFWMLPVPT TAGNQMESSS NNNTAAGHRA PPMWPFVNSA GGGAGGGGGA ATHFMAGTGF SFPMDQYRGS 301: PLQLGSFLAQ PQPTQNLGLS MPDSNLGMLA ALNSAYSRGG NANANAEQAN NAVEHQEKQQ QSDHDDDSRE ENSNSSE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)