AT1G58050.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : RNA helicase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
RNA helicase family protein; FUNCTIONS IN: helicase activity, ATP binding, nucleic acid binding, ATP-dependent helicase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RNA helicase family protein (TAIR:AT1G58060.1); Has 11630 Blast hits to 8888 proteins in 1553 species: Archae - 2; Bacteria - 4647; Metazoa - 2623; Fungi - 1414; Plants - 883; Viruses - 235; Other Eukaryotes - 1826 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:21478590..21487839 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 159348.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.56 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1417 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAPTKKPQKN KQSKNEIASS LIPNSGHKKP SKAPKLLISP ENEDRLRRLL LNFRRTPSPV TATLSVTQKR KKLNNLYENL SCEGFLDNQI ELVLSSLRDG 0101: ATLETALDWL CLNLPSHELP VNFSNGASRF PSTGRSVAVI SKSKKDWNVS AESSVQEVKE VPESEVLVRV KSKRDEEEED SLSSCQPSQA DWIHQYMKRL 0201: EEEELESSDD ERDKVSGPRS FEVIAKEYCV ERYNAIKAKR KGDKSGQSQA GLAICKLKEE MNALGPSEAI LESEFQRDRQ DCEGAREKEV ASSVLDDVHE 0301: SVNADAFFFQ LFDDLTLDTN PVGSCKSEEQ ESVVSNDSLD DLDLGDLFDE DVPPYVPSPH ELLELQKKEI MRELCNEKHL TKLNGIWKKG EAQKIPKALL 0401: HQLCQRSGWI APKFNKVTGE GRNFSYTTSV MRKSSGFGKS RQAGGLVTIQ LPHQVEDFES IQDAQNRVAA FALHKLFSDL PVHFAITEPY ASLVLIWKQE 0501: ESLGITSREE QRREKFVESL LEADNFSLTT TSRGIHSALP MVDSCVKEND DLDVVKSNHR ARRNSSMAAE CSSLKQKQEN KKKMQKYKDM LKTRAALPIS 0601: EVKKDILQKL KEKDVLVVCG ETGSGKTTQV PQFILDDMID SGHGGYCNII CTQPRAITVA QRVADERCEP PPGFDNSVVA YQVRHQNARS DKTRLLFCTT 0701: GILLRKLVGD TTLKDVTHII VDEVHERSLM GDFLLIILKS LIEKQSWDNA LPKLKVILMS ATVDAHQFSR YFGQCPIITA QGRTHPVTTY FLEDIYERTK 0801: YLLASDSPAA LSSDTSITDK LGSVNVPRGK KNLMLAGWGD SYLVSEDSLN TSYDSIKYIA SAVVDYDLLE ELICHIDDTC EEGAILVFLP GMSEINMLLN 0901: RLAASYRFRG ASGDWLLPLH SSIASTEQKK VFLRPPKGIR KVIIATNIAE TSITIEDVVY VIDSGKHKEN RYNPHKKLSS MVEDWVSKAN ARQRMGRAGR 1001: VKPGHCFSLY TRHRFEKLMR PYQVPEMLRV PLVELCLHIK LLGLGQIKPF LSKALEPPSE SAINSAILLL HKVGALEGDE ELTPLGHHLA KLPVDLLIGK 1101: MLLYGGIFGC LSPILSIAAF LSCCKSPFVY AKDEQNVDRV KLALLSDKLE SSSNLNNNDR QSDHLLMVVA YEKWVRILHE QGFKAAESFC ESKFLNSSVM 1201: RMMRERRVEF GMLLADIGLI NLPKGKGRRK ENFDVWFSDK TQPFNMYSQE PEVVKAILCA GLCPNIAEGL VNRLTKPAEE TQRYAVWHDG KREVHIHRNS 1301: INKNCKAFQY PFIVFLEKLE TKKVVYLQDT TVVSPFSILL FGGSINVHHQ SGSVTIDGWL KLTAPAQTAV LFKELRLTLH SILKDLIRKP EKSGIVHNEV 1401: VKSMVHLLIE EGKPQHT |
||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)