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AT1G57870.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.814
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : shaggy-like kinase 42
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
shaggy-like kinase 42 (SK42); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: response to salt stress, hyperosmotic response; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: shaggy-like protein kinase 41 (TAIR:AT1G09840.6); Has 104123 Blast hits to 103018 proteins in 3860 species: Archae - 88; Bacteria - 10212; Metazoa - 38684; Fungi - 11634; Plants - 25207; Viruses - 381; Other Eukaryotes - 17917 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G57870-MONOMERBioCyc:ARA:GQT-709-MONOMERBioCyc:ARA:GQT-809-MONOMERBioGrid:27387
EC:2.7.11.1eggNOG:COG0515eggNOG:KOG0658EMBL:AC079732
EMBL:AC079991EMBL:BT002018EMBL:BT008861EMBL:CP002684
EnsemblPlants:AT1G57870EnsemblPlants:AT1G57870.1EnsemblPlants:AT1G57870.2entrez:842162
ExpressionAtlas:Q9FVS6GeneID:842162Genevisible:Q9FVS6GO:GO:0004674
GO:GO:0005524hmmpanther:PTHR24057hmmpanther:PTHR24057:SF3HOGENOM:HOG000233017
InParanoid:Q9FVS6InterPro:IPR000719InterPro:IPR008271InterPro:IPR011009
InterPro:IPR017441iPTMnet:Q9FVS6KEGG:ath:AT1G57870KO:K03083
PaxDb:Q9FVS6Pfam:PF00069Pfam:Q9FVS6Pfscan:PS50011
PhylomeDB:Q9FVS6PIR:A96613PRIDE:Q9FVS6PRO:PR:Q9FVS6
PROSITE:PS00107PROSITE:PS00108PROSITE:PS50011ProteinModelPortal:Q9FVS6
Proteomes:UP000006548Reactome:R-ATH-3371453RefSeq:NP_001117510.1RefSeq:NP_176096.1
scanprosite:PS00107scanprosite:PS00108SMART:SM00220SMR:Q9FVS6
STRING:3702.AT1G57870.3SUPFAM:SSF56112TAIR:AT1G57870tair10-symbols:ATSK42
tair10-symbols:SK42UniGene:At.36954UniProt:Q9FVS6
Coordinates (TAIR10) chr1:-:21431358..21434877
Molecular Weight (calculated) 47837.60 Da
IEP (calculated) 7.69
GRAVY (calculated) -0.39
Length 420 amino acids
Sequence (TAIR10)
(BLAST)
001: MESHLGNGVG SSRSAKNTKN TSSSVDWLSR DMLEMKIRDK TEADEERDSE PDIIDGVGAE PGHVITTTLP GRNGQSRQTV SYIAEHVVGT GSFGMVFQAK
101: CRETGEVVAI KKVLQDKRYK NRELQIMQML DHPNVVCLKH SFYSRTENEE VYLNLVLEFV PETVNRTARS YSRMNQLMPL IYVKLYTYQI CRGLAYLHNC
201: CGLCHRDIKP QNLLVNPHTH QLKICDFGSA KVLVKGEPNI SYICSRYYRA PELIFGATEY TTAIDIWSTG CVMAELLLGQ PLFPGESGVD QLVEIIKVLG
301: TPTREEIKCM NPNYTEFKFP QIKPHPWHKV FQKRLPPEAV DLLCRFFQYS PNLRCTAVEA CIHPFFDELR DPNARLPNGR PLPPLFNFKP QELSGIPPET
401: VDRLVPEHAR KQNHFMALHS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)