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AT1G57550.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.877
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Low temperature and salt responsive protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Low temperature and salt responsive protein family; INVOLVED IN: response to cold, hyperosmotic salinity response; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0057 (InterPro:IPR000612); BEST Arabidopsis thaliana protein match is: Low temperature and salt responsive protein family (TAIR:AT2G38905.1); Has 1255 Blast hits to 1255 proteins in 454 species: Archae - 0; Bacteria - 648; Metazoa - 29; Fungi - 173; Plants - 377; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).
Protein Annotations
BioGrid:27355eggNOG:COG0401eggNOG:KOG1773EMBL:AC009323
EMBL:AC079733EMBL:CP002684EMBL:DQ446368EnsemblPlants:AT1G57550
EnsemblPlants:AT1G57550.1entrez:842130GeneID:842130Genevisible:Q9FE70
GO:GO:0016021Gramene:AT1G57550.1hmmpanther:PTHR21659hmmpanther:PTHR21659:SF25
InParanoid:Q9FE70InterPro:IPR000612KEGG:ath:AT1G57550OMA:GLEFWVC
PANTHER:PTHR21659PaxDb:Q9FE70Pfam:PF01679Pfam:Q9FE70
PhylomeDB:Q9FE70PIR:D96609PRO:PR:Q9FE70PROSITE:PS01309
Proteomes:UP000006548RefSeq:NP_176067.1scanprosite:PS01309STRING:3702.AT1G57550.1
TAIR:AT1G57550TMHMM:TMhelixUniGene:At.52239UniProt:Q9FE70
Coordinates (TAIR10) chr1:-:21312541..21312809
Molecular Weight (calculated) 5842.58 Da
IEP (calculated) 6.25
GRAVY (calculated) 1.64
Length 52 amino acids
Sequence (TAIR10)
(BLAST)
1: MGSFLEVLCA IFIPPVGVFL RYGLGLEFWV CLLLTLFAFI PGLIYAIYVL TK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)