AT1G56680.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Chitinase family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Chitinase family protein; FUNCTIONS IN: chitin binding, chitinase activity; INVOLVED IN: carbohydrate metabolic process, cell wall macromolecule catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: shoot apex, sepal, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 19 (InterPro:IPR016283), Chitin-binding, type 1 (InterPro:IPR001002), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: Chitinase family protein (TAIR:AT2G43600.1); Has 1945 Blast hits to 1934 proteins in 382 species: Archae - 0; Bacteria - 418; Metazoa - 15; Fungi - 16; Plants - 1444; Viruses - 3; Other Eukaryotes - 49 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:21250428..21251417 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 31184.50 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.66 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.20 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 280 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATQNKIQKN SLIIFLFTLV VIAQTATSQN CLTIGCPGIN ECCSHTGYCG TNVEHCGFWC LSGPCQLSKS SSSYRLNDGP RGKIESIVTP ALFHRLMRKV 101: GSNCTGKGFY TREAFITAVK SFEGYKGTVA KREIAAILAQ FSYESGNFCY KEEVTSETYC SSSKTYPCQS GKKYYGRGLL QSIKWNEFYG EAGKYLGLPL 201: LKDPDMVARS PEVAFKFAMW FWKTEVGPSL RLGFGATTMR INGIECGGMS WNAEAMQNRI NQYLEICKWF GVNPGKDLYC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)