AT1G56380.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.984 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Mitochondrial transcription termination factor family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Mitochondrial transcription termination factor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, fruit; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT1G62110.1); Has 681 Blast hits to 610 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 15; Fungi - 0; Plants - 655; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:21101374..21102701 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44565.10 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.58 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.08 | ||||||||||||||||||||||||||||
| Length | 388 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAADDVIPRD AQKEPKLTVS YLVDSVGIPI KFAESILKEV SSKDKCNPNS VLNLLRSYDF TDSQISSIIT TDPELLMEDA ENSLCPKLKF LESREILSSR 101: LNDIVTRVPK ILRMEEEKSM ITYYDFVKTI TLTSSRSDFY KVCELYPYIE SSIRKVIEMG FDPFAPKIFD ATVVVCTLSN ETLEERVNIY KTLGFDVRDV 201: WEMFKKCPTF LNISEKKITQ SFETLKKCGL VEEEVISMFQ KSPQCIDFSE LDITQNFEFL KGCGLVEEEV LSMFKRYPQC IGFSEKKILN AVETFLGQGF 301: SKDEVMMMVN REGVVSIPVV LEFSMEKMIV PRCNVIKALT SKRLLKTEVS SMFSVLICPD EVFLERYVSK HDDQELVDEL MSIFTKDQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)