AT1G56350.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Peptide chain release factor 2 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Peptide chain release factor 2; FUNCTIONS IN: translation release factor activity, codon specific, translation release factor activity; INVOLVED IN: translational termination; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Class I peptide chain release factor (InterPro:IPR000352), Peptide chain release factor 2 (InterPro:IPR004374), Peptide chain release factor (InterPro:IPR005139); BEST Arabidopsis thaliana protein match is: high chlorophyll fluorescent 109 (TAIR:AT5G36170.2); Has 16865 Blast hits to 16865 proteins in 2794 species: Archae - 0; Bacteria - 10325; Metazoa - 292; Fungi - 236; Plants - 212; Viruses - 15; Other Eukaryotes - 5785 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:21094840..21097826 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 53430.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.40 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.35 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 482 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLSLIIRRSR SRFIIHGIKI SCNSLSAVDS SSSVLVSRRT FSSTPALSYF GFNYGKISNL NQRFGNYAYS GSSFASSTRS LSSEAVAVAA TCDGLTVERI 101: IANQWPILDE NEGDWKSHAA AIAQSIQVIK RRLQWKKLLV RLKVLSAELN KSDLWDDPTH AGKISREHGS LTGKMKGVMT FERELLEHID MLKLAKEEND 201: SELESETLKA LIDMRRVSKE KELEALLSAD NDPCSCYIEV QAGAGGTESN DWAAMVMEMY KTWAQRRKFS VTVVDEAPGE IAGIKRATIK VNGEYAYGYA 301: KAEVGVHRLV RISPFDSGKR RHTSFAAVAV IPILGDGSTR VEINDSDLRI ERFRSGGAGG QHANTTDSAV RIVHIPTGIT ATCQNERSQH SNKASAMAVL 401: QSRLDQLEMA RQTAMNAQHT QSLTEISWGN QIRTYVLHPY RMVKDLRTNY EVSDPDSVLE GDLDGFILSF LSSSLDKDDP EH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)