AT1G55980.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.993 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : FAD/NAD(P)-binding oxidoreductase family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FAD/NAD(P)-binding oxidoreductase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: FAD dependent oxidoreductase (InterPro:IPR006076), Adrenodoxin reductase (InterPro:IPR000759); BEST Arabidopsis thaliana protein match is: FAD/NAD(P)-binding oxidoreductase family protein (TAIR:AT1G56000.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:20938899..20941813 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50991.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.53 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.31 | ||||||||||||||||||||||||||||||||
| Length | 466 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTLRSVQSRS KRKPIDVFDY SDEDDRVEET PSQIRFPIAK DTQRESKVLQ HIVIDVEVPV NEEPSRCELS GDGNSDLVDV ISHGRIGIDS STSSSLTEND 101: EVSTGEATNP ASDPHEVEPE NAFRCKLHKA KAQKECKPMA ATTISPAIRK QMSSVAVAMK VAVIGSGISG AVCASTLARN GVSVTIFDSG RGPGGRMSQR 201: REIGEDGKEL MFDHGAPFFC VSNSDAMALV HEWESRGFVS EWKQVFGSFD CASNKFLGIQ QEGDAKKYVG VPGMNSISKA LCNESGVKSM FGTGIAKMEW 301: LEEEIPWLLT DSKGENLGRF DGVVASDKNI VSPRFTQVTG LPPPLDLSLV PELATKLQNI PVLPCFSLML AFKEPLSSIP VKGLSFKNSE ILSWAHCEST 401: KPGRSTDSER WILHSTPDYA NSVIAKTGLQ KLSSETLNKI SEEMFKEFQC SGLVSSLPFF MKAHRW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)