AT1G55970.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : histone acetyltransferase of the CBP family 4 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
HAC4 is most likely to be an expressed pseudogene that lacks HAT function. there is a single nucleotide deletion in both the HAC4 genomic and cDNA sequences relative to its homologs. The resulting frameshift within the open reading frame causes a stop codon to occur within the predicted acetyltransferase catalytic domain. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
histone acetyltransferase of the CBP family 4 (HAC4); FUNCTIONS IN: histone acetyltransferase activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, TAZ-type (InterPro:IPR000197), Histone H3-K56 acetyltransferase, RTT109 (InterPro:IPR013178), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, ZZ-type (InterPro:IPR000433), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: histone acetyltransferase of the CBP family 5 (TAIR:AT3G12980.1); Has 778 Blast hits to 575 proteins in 103 species: Archae - 0; Bacteria - 0; Metazoa - 394; Fungi - 19; Plants - 254; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:20932451..20938290 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 165079.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.04 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.57 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1456 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MNNNKEVPQN SVAVSSSSSA PITVISPQQD ANNFIKKRRT ALRNRIYAIV RHKQKQHQIF LDKKNQQQQQ RVDDATQRAL LEKQDQQCIA ATRMIEEELL 0101: KSSRSFEEYF DLRTFDARVR TILQQLGTML SQRRAAAAAM NNGEAQCITS TRAVHTSISV SNSFQCGRSL VPINCTTATA GAFSIGPDMQ THHSTGANHQ 0201: MVEVNRPNMN QITCGISSPL ITGFNGNCVP VSANIPMTSQ DLFNATHFST LPQPFLQPPP DQSHMHRYSM SNVASFGQSN PYPCGVVMSS GSMAVAQNSI 0301: PWNNPNPMQG LDPTVTSYHS NLQPMQQTPL PKRQLHHPLW NTNFQSAPNN RDNLPQVSQQ LSNHGSRQHR GQHSQNLYPG QLQNQDRLLP NLTQQAMALA 0401: APVMHVPSKQ VNEDCGQTSS NTVLRWIPFM FHARHCKAKK DKCASKFCFQ ARKIVKHIDC CKVPNCKYRY CLGTRMWLDH FKQCKSISCR TCVAVREYME 0501: KNKYTIVPLR RAKCSSASSK CQPKKSSKSR QAYKKGGAEA PSVDADLQRS IKRPKLHRPS QNITPETKSI SVTGCGVVCK PHSLMNMQEK DGLQSLKVEA 0601: MPMDIDVPGA SEIPVTRELV KHVAEDTPKG NNCGGFAMVE KTSCLLAQGK SKCMNEMSAP KEENVKQSVE VVDASKMEIS SLVELFTPEQ VKEHIRSLRQ 0701: WVGQSKTKAE KNKAMGCSMS VNSCQLCAVE WLVFEPVPIY CSPCGIRIKK NALHYSIAVG ESRHYVCAPC YNEAREKLVF LDGTSIPKTR LQKKKNDEQV 0801: PEGWVQCDKC EAWQHIICAL FNSRRNHGES TKYTCPSCYI QEVEQRERRP LPLSAVPGAT SLPVTSLSKH LEERLFKKLK EERQERARLQ GKTYEEVPGA 0901: ESLTVRVVAS VDKVLEVKER FLELFREENY PSEFPYKSKA IFLFQKIENV EVCLFGMFVQ EFGTDSGPPN ERRTFRTVSG EALRTFVYHE ILIGYLDYCK 1001: KRGFTSCYIW ACPPLKGDDY ILYCHPEIQK TPKTDKLREW YLAMLRKASK EDVVVECTNL YNHFFVQSGE CRANVTAARL PYFDGDYWPS AAEDLLRQMN 1101: QEDDGETKLH RKGLTKKVIS KRALKAVGQL DLSLNASKDR LMMQKLGETI CPMKEDFIMV HLQHCCKHCT TLMVSGNRWV CNHCKNFQIC DKCYEVEQNR 1201: INIERHPINQ KEKHALFPVA IKDVPTKIED KDNNLESEFF HNRQAFLNLC QGNNYQYETL RRAKHSSMMI LYHLHNPTAP AFATVCTICQ QEVENSQGWH 1301: CEVCPGYDVC SACYSKDSIN HSHKLTSRSS STDSTVVQQN GQASQSYQVK LEKLKKLLVH AATCRSTQCQ YQGCRKSKML FRHCIDCTTG DCPICKGLWS 1401: LLKLHARNCR DSKCTVPKCS GLRAISRRKQ QQADKRRRAA VMEMMRERAA EATRTG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)