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AT1G55860.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25402197 (2015): plastid plastid thylakoid plastid thylakoid membrane
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:18433157 (2008): cytosol
  • PMID:18433157 (2008): nucleus
  • PMID:14671022 (2004): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ubiquitin-protein ligase 1
Curator
Summary (TAIR10)
encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis.
Computational
Description (TAIR10)
ubiquitin-protein ligase 1 (UPL1); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination, ubiquitin-dependent protein catabolic process; LOCATED IN: cytosol, mitochondrion, ubiquitin ligase complex, membrane; EXPRESSED IN: guard cell, cultured cell, trichome, leaf; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), E3 ubiquitin ligase, domain of unknown function DUF913 (InterPro:IPR010314), HECT (InterPro:IPR000569), Ubiquitin interacting motif (InterPro:IPR003903), E3 ubiquitin ligase, domain of unknown function DUF908 (InterPro:IPR010309), Armadillo-type fold (InterPro:IPR016024), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: ubiquitin-protein ligase 2 (TAIR:AT1G70320.1); Has 8980 Blast hits to 7230 proteins in 418 species: Archae - 33; Bacteria - 397; Metazoa - 4053; Fungi - 1646; Plants - 643; Viruses - 68; Other Eukaryotes - 2140 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5021eggNOG:KOG0939EMBL:CP002684EnsemblPlants:AT1G55860
EnsemblPlants:AT1G55860.1entrez:842036ExpressionAtlas:F4I1Y3Gene3D:1.25.10.10
GeneID:842036GO:GO:0004842GO:GO:0016874Gramene:AT1G55860.1
hmmpanther:PTHR11254hmmpanther:PTHR11254:SF291InterPro:IPR000569InterPro:IPR003903
InterPro:IPR009060InterPro:IPR010309InterPro:IPR010314InterPro:IPR011989
InterPro:IPR015940InterPro:IPR016024InterPro:IPR025527KEGG:00220+6.3.2.-
KEGG:00261+6.3.2.-KEGG:00380+6.3.2.-ncoils:CoilOMA:IAVYAHT
PaxDb:F4I1Y3Pfam:PF00627Pfam:PF00632Pfam:PF06012
Pfam:PF06025Pfam:PF14377Pfscan:PS50030Pfscan:PS50237
Pfscan:PS50330PRIDE:F4I1Y3PROSITE:PS50030PROSITE:PS50237
PROSITE:PS50330ProteinModelPortal:F4I1Y3Proteomes:UP000006548RefSeq:NP_175982.2
SMART:SM00119SMART:SM00165STRING:3702.AT1G55860.1SUPFAM:SSF46934
SUPFAM:SSF48371SUPFAM:SSF56204TAIR:AT1G55860tair10-symbols:UPL1
UniGene:At.48310UniGene:At.66950unipathway:UPA00143UniProt:F4I1Y3
Coordinates (TAIR10) chr1:-:20879900..20895393
Molecular Weight (calculated) 432637.00 Da
IEP (calculated) 4.85
GRAVY (calculated) -0.24
Length 3930 amino acids
Sequence (TAIR10)
(BLAST)
0001: MAIAEEVTVF AETSLGTRIV MAVPLDITAA DFKRKLEKTH ASCLSSVGEI EVHGLMVKRK SRFYHLVESV PIRYIFLDNQ KPWFIHAEAR VVSRSQESSV
0101: SNSIDKTHIR HCHGSDNSIE RVTALIQGKD KKIKKSRAKS DSRNVASGQE TCLDKREYLG PSTSEPETIK SLPSIARVAE MKNSECFKSF TPKPPERKPV
0201: DSESESIGKR ITVAANNIRM QGKTHNSSSL SSSIFRSNSC RNRSLDGKII TSLAKFMVFE PSKIKSFINS VTSVPLELIH EPLACFRWEF DKGDFHHWVD
0301: LFNYFDTFFE KHVQVRKDLH IEENFEESDP PFPKDAVLQV LRVIRVVLEN CTNKHFYSSY EQHLSLLLAS TDADVVEACL QTLAAFLKRQ IGKYSIRDAS
0401: LNSKLFSLAQ GWGGKEEGLG LTSCAAENSC DQVSLQLGRT LHFEFYPSDE SPSELPGGLQ VIHVPDVSIC AESDLELLNK LVIDHNVPPS LRFALLTRMR
0501: FARAFSSLAT RQQFTCIRLY AFVVLVQASG DTENVVSFFN GEPEFVNELV TLVSYEDTVP EKIRILCLLS LVALSQDRTR QPTVLTAVTS GGHRGLLSGL
0601: MQKAIDSVVC ITSKWSLAFA EALLSLVTVL VSSSSGCSAM REAGLIPTLV PLIKDTDPQH LHLVSAAVHI LEAFMDYSNP AAALFRDLGG LDDTIFRLKL
0701: EVSRTEDDVK EKNCSSDSNG PDTEQLPYSE ALISYHRRLL LKALLRAISL GTYAPGNTNL YGSEESLLPE CLCIIFRRAK DFGGGVFSLA ATVMSDLIHK
0801: DPTCFNALDS AGLTSTFLDA ISDEVICSAE AITCIPQCLD ALCLNNSGLQ AVKDRNALRC FVKIFTSPSY LRALTGDTPG SLSSGLDELL RHQSSLRTYG
0901: VDMFIEILNS MLIIGSGMEA TTSKSADVPT SAAPVPMEID VDEKSLAVSD EAEPSSDTSP ANIELFLPDC VCNVARLFET VLQNAEVCSL FVEKKGIDAV
1001: LQLFSLPLMP LSTSLGQSFS VAFKNFSPQH SAGLARIVCS YLREHLKKTK ILLVSIEGTQ LLKLESAIQT KILRSLSCLE GMLSLSNFLL KGSASVISEL
1101: SAADADVLKE LGITYKQTIW QMALCNDTKE DEKKSVDRGS DNSVSASSST AERESDEDSS NALAVRYTNP VSIRSSSSQS IWGGDREFLS IVRSGEGIHG
1201: RTRHAIARMR GGRTRRHLES FNFDSEIPAD LPVTSSSHEL KKKSTEVLIA EILNKLNCTL RFFFTALVKG FTSANRRRID GASLSSASKT LGTALAKVFL
1301: EALNFDGYGA AAGHEKSLSV KCRYLGKVVD DITFLSFDTR RRVCFTAMVN SFYVHGTFKE LLTTFEATSQ LLWTVPFSIP ASSTENEKPG ERNIWSHSKW
1401: LVDTLQNYCR ALDYFVNSTY LLSPTSQTQL LVQPASVGLS IGLFPVPREP ETFVRNLQSQ VLDVILPIWN HPMFPDCNPN FVASVTSLVT HIYSGVVDAR
1501: ENRSGVTRGI NQRALPLQLD ESIVGMIVEM GFSRSRAEIA LRRVGTNSVE MAMDWLFTNP EQPVQEDDEL AQALALSLGN SSETPKLEDT EKPVDVPQEE
1601: AEPKEPPVDE VIAASVKLFQ SDDSMAFPLM DLFVTLCNRN KGEDRPKIVS YLIQQLKLVQ LDFSKDTGAL TMIPHILALV LSEDDNTREI AAQDGIVTVA
1701: IGILTDFNLK SESETEILAP KCISALLLVL SMMLQAQTKL SSEYVEGNQG GSLVPSDSPQ DSTAALKDAL SSDVAKGESN QALELIFGKS TGYLTMEEGH
1801: KALLIACGLI KQHVPAMIMQ AVLQLCARLT KSHALAIQFL ENGGLSSLFN LPKKCCFPGY DTVASVIVRH LVEDPQTLQI AMETEIRQTL SGKRHIGRVL
1901: PRTFLTTMAP VISRDPVVFM KAVASTCQLE SSGGRDFVIL SKEKEKPKVS GSEHGFSLNE PLGISENKLH DVSGKCSKSH RRVPANFIQV IDQLIDLVLS
2001: FPRVKRQEDG ETNLISMEVD EPTTKVKGKS KVGEPEKASS SRVGEPEKAE IPEKSEELAR VTFILKLLSD IVLMYSHGTS VILRRDTEIS QLRGSNLPDD
2101: SPGNGGLIYH VIHRLLPISL EKFVGPEEWK EKLSEKASWF LVVLCSRSNE GRKRIINELS RVLSVFASLG RSSSKSVLLP DKRVLAFANL VYSILTKNSS
2201: SSSSNFPGCG CSPDVAKSMM DGGTIQCLTS ILHVIDLDHP DAPKLVTLIL KSLETLTRAA NAAEQLKSEV PNEKKNRDSD ERHDSHGNST ETEADELNQN
2301: NSSLQQVTDA AGNGQEQAQV SSQSAGERGS SQTQAMPQDM RIEGDETILP EPIQMDFMRE EIEGDQIEMS FHVENRADDD VDDDMGDEGE DDEGDDEDAD
2401: LVEDGAGVMS LAGTDVEDPE DTGLGDEYND DMVDEDDDDF HENRVIEVRW REALDGLDHF QILGRSGGGN GFIDDITAEP FEGVNVDDLF ALRRPLGFER
2501: RRQTGRSSLD RSGSEVHGFQ HPLFSRPSQT GNTASVSASA GSISRHSEAG SYDVAQFYMF DTPVLPFDQV PVDPFSARLA GGGAPPPLTD YSVVGMDSSR
2601: RGVGDSRWTD IGHPQPSSLS ASIAQLIEEH FISNLRASAP VNTVVERETN TTEIQEQLHP DVPPSVGSET VLGDGNEGGQ QSEERELLNN NENVNNPPDV
2701: MAESFAQGQA NLASPVSQDT GESLQQLEVM QPLPLNSTPN EIDRMEVGEG DGAPIDQVDH EAVHLISTAQ GQPDTSSIQN VSVTAIAPPV DDPDSNFQPS
2801: VDVDMSSDGA EGNQSVQPSP LDGDNNELSS MEATENVRND EQVEEGSLDG RAPEVNAIDP TFLEALPEDL RAEVLASQQA QSVQPPTYEP PPVDDIDPEF
2901: LAALPPDIQT EVLAQQRAQR MVQQSQGQAV DMDNASIIAT LPADLREEVL LTSSEAVLAA LPSPLLAEAQ MLRDRAMSHY QARSSVFGSS HRLNNRRNGL
3001: GYNRLTGMDR GVGVTIGQRA VSSSADGLKV KEIEGDPLVN ADALKSLIRL LRLAQPLGKG LLQRLLLNLC AHSFTRANLV QLLLDMIRPE METSPSELAI
3101: TNPQRLYGCQ SNVVYGRSQL LNGLPPLVFR RVLEVLTYLA TNHSAVADML FYFDSSLLSQ LSSRKGKEKV THVTDSRDLE IPLVVFLKLL NRPQLLQSTS
3201: HLGLVMGLLQ VVVYTAASRI EGWSPSSGVP EKLENKPVGE EASSETRKDA ESELVGEADL SVARRKNCAE IYNIFLQLPQ SDLCNLCILL GYEGLSDKIY
3301: SLAGEVLKKL AAVDVAHRKF FTKELSELAS SLSSSTVREL ATLSSKQKMS RSTGSMAGAS ILRVLQVLSS LTSPIDESNV GTERETEQEE QNIMQRLNVA
3401: LEPLWHELSQ CISMTELQLD HTAAASNINP GDHVLGISPT SSLSPGTQRL LPLIEAFFVL CEKIQTPSML QQDTNVTAGE VKESSAHGSS SKTSVDSQKK
3501: TDGSVTFSKF AEKHRRLLNS FIRQNPSLLE KSLSMMLKAP RLIDFDNKKA YFRSRIRHQH DQHISGPLRI SVRRAYVLED SYNQLRMRSP QDLKGRLNVQ
3601: FQGEEGIDAG GLTREWYQLL SRVIFDKGAL LFTTVGNDAT FQPNPNSVYQ TEHLSYFKFV GRMVAKALFD GQLLDVYFTR SFYKHILGVK VTYHDIEAVD
3701: PDYYKNLKWL LENDVSDILD LTFSMDADEE KHILYEKTEV TDYELKPGGR NIRVTEETKH EYVDLVAGHI LTNAIRPQIN AFLEGFNELI PRELVSIFND
3801: KELELLISGL PEIDFDDLKA NTEYTSYTAG SPVIHWFWEV VKAFSKEDMA RFLQFVTGTS KVPLEGFKAL QGISGPQRLQ IHKAYGAPER LPSAHTCFNQ
3901: LDLPEYQSKE QLQERLLLAI HEASEGFGFA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)