AT1G55840.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Sec14p-like phosphatidylinositol transfer family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Sec14p-like phosphatidylinositol transfer family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT5G47730.1); Has 2029 Blast hits to 2027 proteins in 215 species: Archae - 0; Bacteria - 0; Metazoa - 638; Fungi - 402; Plants - 771; Viruses - 0; Other Eukaryotes - 218 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:20873943..20876018 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 33851.90 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.77 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.41 | ||||||||||||||||||||||||||||||||||||
| Length | 298 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNIHQGYPTE NLLRFLKARD GNVQKAHKML LECLEWRTQN EIDKILTKPI VPVDLYRGIR DTQLVGVSGY SKEGLPVIAI GVGLSTYDKA SVHYYVQSHI 101: QMNEYRDRVV LPSASKKQGR PICTCLKILD MSGLKLSALS QIKLMTAITT IDDLNYPEKT ETYYVVNVPY IFSACWKTIK PLLQERTKKK IQVLKGCGKD 201: ELLKIMDYES LPHFCRREGS GSGRHISNGT VDNCFSLDHS FHQDLYDYVK QQALVKGSGA PIRHGSVHVK FPEPDTEGNK IFDTLENEFQ KLGNDQKI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)