AT1G55790.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.767 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Domain of unknown function (DUF2431) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121), Domain of unknown function DUF2431 (InterPro:IPR019446); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF2431) (TAIR:AT1G55800.1); Has 348 Blast hits to 344 proteins in 131 species: Archae - 0; Bacteria - 16; Metazoa - 59; Fungi - 100; Plants - 130; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:20852685..20856069 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59041.10 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.55 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.44 | ||||||||||||||||||||||||||||||||
| Length | 515 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAMRELSQLN RDSDGDEEVW VKHYSSNHQI LLVGEGDFSF SHSLATLFGS ASNICASSLD SYDVVVRKYK KARSNLKTLK RLGALLLHGV DATTLHFHPD 101: LRYRRFDRVI FNFPHAGFHG RESDSSLIRK HRELVFGFFN GASRLLRANG EVHVSHKNKA PFSEWNLEEL ASRCFLVLIQ RVAFEKNNYP GYENKRGDGR 201: RCDQPFLLGE CSTFKFRFSR VAKELYAEKV RSREVKERES MYPEAILNKQ PVSFDHRYRL QTEFEAIAGT ITLGKSKILW LSQEKGHLHW IFVTTKNVDV 301: YSSKIPVFLI CTLESRQRDI ACFVKTFQFK LVKNHYPNTL TAGVEFLVKF ITGKYEECQQ VTYLRKNFSG YGDGNKQRIV LKMDMSDEKS MKKAMKIASA 401: KPGVRSVSIQ GQNDQLVLLG EGIDLAELTR ELKKKVCMTT IITVQAAPPQ QPPQPHPMGQ YNQMPPARRC TCEIPNSGFC GFCRSMSQPN YQVVPSPYYP 501: PMLYCRDETD GCRIL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)