AT1G55500.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.830 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : evolutionarily conserved C-terminal region 4 | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
evolutionarily conserved C-terminal region 4 (ECT4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 2 (TAIR:AT3G13460.1). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:20719747..20722450 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 65244.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.11 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.80 | ||||||||||||||||||||||||||||
| Length | 592 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSTVAPPADQ AADVLKKLSL DSKSRTLEIP EPTKKTGVYQ YGAMDSNGQV PSFDRSLSPM LPSDALDPSV FYVPNVYQQP YYYGYGSDYT GYTNSESVDM 101: TSGYGYAAFP YSPATSPAPQ LGGDGQLYGA QQYQYPFPLT ASSGPFASSV PASTQSKLST NKAANSASAG IPKGMNGSAP VKPLNQSALY GNSALGGGLA 201: AGYQDPRYSY DGFYTPVSWH DGSNFSDVQR SVSGSGVASS YSKANNNVPA TRNQNSSSNS HYTSMYQPAS MTGYAAQGYY DRVSPNKSYG QYGSTVRSGM 301: GYGSSGYGSR TNERGWLNTD NKYRSRGRGN SYFYGNENID GLNELNRGPR AKGTKATEEV SSEEVKKQTF DESNTEETVT CVLPDREECN RDDFPVEYKD 401: AKFFIIKSYS EDDVHKSIKY NVWASTPNGN KKLDAAYQEA QQKSSGCPVF LFFSVNASGQ FIGLAEMKGP VDFNKNIEYW QQDKWTGSFP LKWHILKDVP 501: NSLLKHITLE YNENKPVTNS RDTQEVKLEQ GLKVVKIFKE HNSKTCILDD FSFYEARQKT ILEKKAKQQQ SQKQVWEGKT NDEKPGTVDS TM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)