AT1G55500.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.873 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : evolutionarily conserved C-terminal region 4 | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
evolutionarily conserved C-terminal region 4 (ECT4); CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 2 (TAIR:AT3G13460.1); Has 1490 Blast hits to 1324 proteins in 197 species: Archae - 2; Bacteria - 19; Metazoa - 721; Fungi - 248; Plants - 363; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:20720203..20722450 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 60655.50 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.79 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.82 | ||||||||||||||||||||||||||||
| Length | 549 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDSNGQVPSF DRSLSPMLPS DALDPSVFYV PNVYQQPYYY GYGSDYTGYT NSESVDMTSG YGYAAFPYSP ATSPAPQLGG DGQLYGAQQY QYPFPLTASS 101: GPFASSVPAS TQSKLSTNKA ANSASAGIPK GMNGSAPVKP LNQSALYGNS ALGGGLAAGY QDPRYSYDGF YTPVSWHDGS NFSDVQRSVS GSGVASSYSK 201: ANNNVPATRN QNSSSNSHYT SMYQPASMTG YAAQGYYDRV SPNKSYGQYG STVRSGMGYG SSGYGSRTNE RGWLNTDNKY RSRGRGNSYF YGNENIDGLN 301: ELNRGPRAKG TKATEEVSSE EVKKQTFDES NTEETVTCVL PDREECNRDD FPVEYKDAKF FIIKSYSEDD VHKSIKYNVW ASTPNGNKKL DAAYQEAQQK 401: SSGCPVFLFF SVNASGQFIG LAEMKGPVDF NKNIEYWQQD KWTGSFPLKW HILKDVPNSL LKHITLEYNE NKPVTNSRDT QEVKLEQGLK VVKIFKEHNS 501: KTCILDDFSF YEARQKTILE KKAKQQQSQK QVWEGKTNDE KPGTVDSTM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)