AT1G55430.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.709 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine/Histidine-rich C1 domain family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT1G55420.1); Has 1374 Blast hits to 579 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1370; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:20697649..20699622 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 75091.20 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.47 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||
| Length | 657 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEPHPLYFVP PPYLTRTKPP CRLSDPAQPH KLCRRRQPTH PPLSICFTCK GKHLKRSKYY YYCATCNLEF HRGCHVFLPE IRSAFHPSHP LTFTALDPEF 101: NASIIHQNWR DSSASEESSE ELINEVVDYD HEDAGDDAVA NEDDDEDAVP NDDDNGGGGG DIYAVAYNDG ASLSYGNHLK CKCCASPLEK LYYHCSTCKF 201: NLNLTCSMRP PPTTISHLKF HEHTLTLFLV RITWPCDVCG FLLNKDTDDL VYACLPCSLM VHRSCIYLPR VIKITRHPHR LSLTSSLQPG DFSCGLCRHT 301: VDVNCGQYSC DKGCQYAIHS KCATWRDVWD GIDLDGVPEE PEEYIEPPFL KIDEDTIQHF SHHEHYMKLH VKKTITEKDK FCEACTLPVM ISQRFYGCME 401: CDFVLDEACA SLPRKIYNPL HKHPLTLHVV PTIDTYTDPN MPITKVIFNC IGCLRYGCGF HYRCHEKGCE EFLLDVRCAS LPDPLIHGCH AHDLFFNFTG 501: GICMGCGTSE CSSFFLECIK CKSFLGIKCA TLPSEAHYRH DRHPLTLCYR DYMTSHHWCE ICESKLSTYY WFYTCDSCKI TLHVTCLLGK DIYVKPHYTF 601: VSDSSHDDQF EIARNEGNSR QLCSNCNLRC AQTLVFKRRG EYESFCTLTC LGDSLDS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)