AT1G55420.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine/Histidine-rich C1 domain family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
embryo sac development arrest 11 (EDA11); FUNCTIONS IN: zinc ion binding; INVOLVED IN: megagametogenesis; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT1G55380.1); Has 31248 Blast hits to 2717 proteins in 273 species: Archae - 49; Bacteria - 26496; Metazoa - 873; Fungi - 230; Plants - 1563; Viruses - 57; Other Eukaryotes - 1980 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:20691775..20693952 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 82506.40 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.41 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.47 | ||||||||||||||||||||||||||||||||
| Length | 725 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEPPPPHFSR AKPPCRLSDP AQPHKLCRRR RPSYPPLSIC FTCKGKQLRS SAYYYYCATC NLEFHRGCHI FLPVIRSSFH PSHPLTFFSS DPKFDVSIIP 101: KYWRDSSATE ESSDESINQL TIEYLGDVSD DDGEDSHSDH DLGASEDDGE DSHSDHDLGA SDDDGEDSHS DHDLGARDDD GNGNGAGDVH ADGEASLSDG 201: NHLKCKCCGV PLQMTYYHCS ICKFNLNLDC SMRQPPPIIS HLKSHEHTLT LFPIRLPLPC DACGLSLNDT EDLVYSCLPC SRMVHRSCIY LPRVIKITRH 301: QHRLSHTSSL QPGDFSCGVC RQTVDVNYGQ YSCNKECHYA VHSKCATRND VWDGKDLDGV PEEPDEFIEP PFLKIDEETI QHFSHHHYLK LHEKKTIYKR 401: DKFCEACTLP VMISQRFYGC MQCDFVLDET CASLPRKKNH PLHKHPLNLH TLPLGESAMI NKGATSKDIF KCIGCGRIGC GFYYKCDEKN CDEFLLDVRC 501: ASLPDPFVHD CHPHDHPLFF NLTKGNCMGC GSDSCSSYFL ECIKCKSFLG IKCATLPCEA HYTHDRHPLT LCYEEEEDTT SGQYWCEICE FKLDPKTWFY 601: TCDYCMITLH VNCLLGKDIY LKPCHIFKVG LFYKEVEIAR NDGNSRLFCY ICRLRCGQTL VFKWLGRRKS FCTLRCIGKY VKDTRGYYDA VAMGYFESYP 701: TNLVTSPEAS DSSVIKSAFD FLFRD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)