AT1G55390.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine/Histidine-rich C1 domain family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT1G55420.1); Has 11745 Blast hits to 4394 proteins in 388 species: Archae - 57; Bacteria - 4511; Metazoa - 1535; Fungi - 633; Plants - 1887; Viruses - 132; Other Eukaryotes - 2990 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:20680989..20683043 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 78359.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.28 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.56 | ||||||||||||||||||||||||||||
| Length | 684 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKPPPYFSVS EPQCRLSDPA QPHKLCRRRR RSHGPLSICF SCKGKHLEGR KYYYYCATCK LEFHRGCHLL PPVIRHPFHP SHLLTLISLP PGFDISKIPR 101: NTDDGSAASE RSINETDDDD DSEDGGHDDE DNNFVDDDVI VNDGDGVGED RDGDSDGDGD GGDDDDDDDF QQDIYYRVNG YDYYYNNYDD GDNAAYASIS 201: DGNDHRKCKC CQDPLKKVHY HCSICKFNLN LSCSMRPPPP TISHLKSHEH TLTLFPIRLP SPCDACGLSL SDTIDLIYAC LPCSHMIHRS CIYLPRVIQI 301: TRHPHRLSLT SSLQVGDFSC GVCRQTVDIN YGHYSCNKGC NYAVHSKCAT REDVWDGKDL EGVPEKPDED IEPFVRIDEE TIQHFSHHEH YMKLHEKETI 401: SEKDKFCEAC TLPVMISQRY YGCTECDFVL DEACASLPRK IYNPLHKHPL TLQPFPIDET SNIADNISTK GIFECDGCHR LGCGFVYRCS KRKCVFRLDV 501: RCASLPDPFI HDCHPHDLFF NSTKGNCIGC GSDECSSYFL ECIKCNSFLG IRCASLPFEA HYKHDRHPLI LCRDEDTSSG LYWCEICESE LDPKTWFYTC 601: DFCTITLHVN CLLGKDMYMK PQYIFKIGYR HRKVEIARND GNSRLFCTRC KRHCMQNLIY KRIGRDQSYC TLKCFGARLM LELF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)