AT1G55380.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.803 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine/Histidine-rich C1 domain family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine/Histidine-rich C1 domain family protein; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT1G55420.1); Has 40762 Blast hits to 3420 proteins in 277 species: Archae - 16; Bacteria - 33283; Metazoa - 2053; Fungi - 735; Plants - 1877; Viruses - 86; Other Eukaryotes - 2712 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:20676622..20678607 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 75504.90 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.44 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.41 | ||||||||||||||||||||||||||||
| Length | 661 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEPLPPYFSR AKPPCRLSDP AQPHMLCRRR RPSHPPLSIC FSCKGKQLKR NNYYYYCATC NLEFHRGCHI FLPEIRHPFH PSHPLTFISL LLPKFDVTKI 101: PKNWMDSSSS SDESEDDDDD EKSIKEECED DGDDDDGDSS DSDDDDNNFD ANNDGASLSD GNHLKCKCCQ VPLEKIYYHC SICKFNLNVE CSMRPPPTTI 201: SHLKSHEHIL TLFPIRLPLP CGACGLSLSD AEDLVYACLP CNLLVHRSCI YLPRVIKITR HPHRLSLTPS LQPGDFSCGV CRQTVDVNYG QYSCDKECHY 301: AVHSKCATRN DVWDGKDLDG VPEEPDEFIE PPFLKIDEET IQHFSHHHHL KLHEKKTIGG KDKFCEACTL PVMISQRYYG CMQCDFVLDE TCASLPRKKN 401: HPLHKHPLNL HILPLGESAM INKGATSKDI FQCIGCGRIG CGFFYKCDEK DCDEFLLDVR CASLPDPFVH DCHPHDHPLF FNLTKGNCMG CGSDNCSSYF 501: LECIKCKSFL GIKCATLPCE AHYIHDRHPI TLCYGEEDTT SGQYWCEICE LKLDPKTWFY SCDFCKITLH VNCLLGEDIY LKPCHIFKVG LYYKEVEIAR 601: NDGNSRLFCY TCELRCGQTL VFKYIGGCKS FCTLRCIGNY FDAKDGWVYD AARNLNIFRR I |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)