AT1G55325.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA polymerase II transcription mediators | ||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes the Arabidopsis homolog of the transcriptional regulator MED13, is dynamically expressed during embryogenesis and regulates both developmental timing and the radial pattern formation. | ||||||||||||||||||||
| Computational Description (TAIR10) |
GRAND CENTRAL (GCT); FUNCTIONS IN: RNA polymerase II transcription mediator activity; INVOLVED IN: regulation of development, heterochronic, regulation of radial pattern formation; LOCATED IN: mediator complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex, subunit Med13 (InterPro:IPR009401). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:20637594..20647714 | ||||||||||||||||||||
| Molecular Weight (calculated) | 217281.00 Da | ||||||||||||||||||||
| IEP (calculated) | 6.19 | ||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||
| Length | 2001 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MWTNVFRIGG LHNVSWFQFL PSETELNPGF DRSSRAEQNE VATYLVLSSH LRLQKEGFLT TWTNSFVGPW DPSQGLYNPD EKIKLWLFLP GRHSSISDKA 0101: QAAVSKLRVV ASGIWVAPGD SEEISVAFSQ SLRNCIERAL SGISYMRFGD VFSKFSPQSE EYLRRGQPTV EFIFAATEEA VFVHVIISAK NVRTLSSGDA 0201: ERMLRSSLKN SSYRLPVIVS PHGMRGSLTG FCPNDLVKQV YFSSGNLKTS TGYVGLPSHI GRGSRLINGN HCYVEVTLGC CQNRNDNTSQ ANSTFAVNLP 0301: HNQCPEPSVG SKDHRKGQSD LSSVCEKKFI YPAEAVLVPI LQSAFAKFSL KRFWLQNWIG PSLAGSSLFM HWAGDFDCLG ASENKSDGFY EKNGYNSSGS 0401: SRNSSISSTS SASSGSGWRM TSRTGDLDAD ADSLTCRQSG LTCNDDRLKM GSKRPRTGMA ESFGQVGIEN DQIGWDWDAD DDDDDREVGM DIKALLSEFG 0501: DFGDFFENDA LPFGEPPGTA ESHVLVFPPD SADVGSSPVD MMDVSDQIVL PVGFSSFESF NPVPPIIDEC LIKSQEVLHS SITSVPSNQM SISSTGEFDH 0601: LLKAEAMMTF APEYGAVEAP MSEISSTFFK SPYLPKSHKV ESSNSRTSNY VYGATPPTTD SDGAGDMILF GSKSCIGNNA GRTLYHSREH YTQVEGRKGR 0701: HDKLPTVISD NSSTKEGVSQ SIHSKHSAAN AVKVVQGKKT DGISAVVSTL LSSKTLLATD VGSVMFQAFM CRMRHIITSS KHSSPVSLTR LSGNFFLNQL 0801: SNEPSTLTDN ISARNEIYKK DIPTRIAGDF DGGMLDSHMS APVGVWRTVS VPKTAKPASS PNIEAGSSLP HSSFSEDSLL SYGQRQPLQD LLDGIALLVQ 0901: QATSFVDLAL DSDCGDGPYG WLALEELWRR ELSCGPSAGH AGCGGTLASC HSLDIAGVKL VDPLSAEVFP SSVITLLQSD IKTALKSAFG QSDGPLSVTD 1001: WCKGRNQSGD GGSISEGFTA ESALSEVSNA IDGGKGDETA QSQDIYSSEL LRPTLFVLPS PAILVGYQDD WLKISTNSLT HWEKAPFEPY ALPKSINYAV 1101: VCPDIDPLTC AATDFFQQLG TVYETCRLGT HLPQSLGNQM EKDVGRLSSS GFVLLDCPQS MKIESNNTSL LGSLSDYFLS LSNGWNVNSY LKSLSKALKG 1201: LKLGSGLYTN QKEGSGSPCV VVYIVCPFPD PSAVLRTIVE SSIALGSVIQ SDRDRRSILN SQVARAFSSS TAVDEASISH IPVLSGFSVP KLVLQVVSVD 1301: SIFRITSPSF NELVILKDTA FSVYNKARRI SRGMPNDAFF SSSLPSRSSS ALTPMNSISG IWKDCGGSRM TGSTHPRDGE IDVSLRTSGW DTSTSWQIPR 1401: SGGLSCDPNR NGDFYLNDEI FYLFEPLFIL SEPGSVERGV SPTFTSLGSE SSKPIPEDGG RGSGPGMNSM EGITSGSSSQ GDVSQLEGKA IPSLHCCYGW 1501: TEDWRWLVSI WTDARGELLD THIFPFGGIS SRQDTKGLQC LFVQVLQQGC QILQACSSPD NGSFKPRDFV ITRIGNFFEL EYQEWQKAIY SAGGPEIKKW 1601: PIQLRRSAPS GIATNSNGSS LQQQDLSLIQ ERASSTSTLY SSHSKQSTFV KGSMGQSAGR KQIMGGQTIS GTPRGLFQWV HSISFASISL DHSLHFVLPA 1701: ELVSAGGGQS STGMSSVNYI EGFTPVKSLG STAFSYMMIP SPNMRFLHPS PLQLPTCLTA ESPPLAHLLH SKGYAIPLST GFVVSKAVPS MRKDSRINVK 1801: EEWPSVLSVS LIDYYGGYDN AHDKILQGIV KQGGGTKETR DFEVESHLIL ESIAAELHAL SWMTVSPAYL DRRTALPFHC DMVLRLRRLL HFADKEVSRI 1901: PDKTGLKVLT TDSGSQSLSM SLPRDHLDGI CFQHTDCNFL RCCSPFLSGH IRRDGEQVNG QIKTAAIYYG VSLFPGKIDN LNAMVWSHSC CRPLSSMHHM 2001: A |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)