AT1G55325.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA polymerase II transcription mediators | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes the Arabidopsis homolog of the transcriptional regulator MED13, is dynamically expressed during embryogenesis and regulates both developmental timing and the radial pattern formation. | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
GRAND CENTRAL (GCT); INVOLVED IN: regulation of development, heterochronic, regulation of radial pattern formation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:20637594..20646875 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 208473.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.11 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.25 | ||||||||||||||||||||||||||||||||
| Length | 1921 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MWTNVFRIGG LHNVSWFQFL PSETELNPGF DRSSRAEQNE VATYLVLSSH LRLQKEGFLT TWTNSFVGPW DPSQGLYNPD EKIKLWLFLP GRHSSISDKA 0101: QAAVSKLRVV ASGIWVAPGD SEEISVAFSQ SLRNCIERAL SGISYMRFGD VFSKFSPQSE EYLRRGQPTV EFIFAATEEA VFVHVIISAK NVRTLSSGDA 0201: ERMLRSSLKN SSYRLPAFRK CLGLAKSEDN RLCYINTSHR PMLFPPVIVS PHGMRGSLTG FCPNDLVKQV YFSSGNLKTS TGYVGLPSHI GRGSRLINGN 0301: HCYVEVTLGC CQNRNDNTSQ ANSTFAVNLP HNQCPEPSVG SKDHRKGQSD LSSVCEKKFI YPAEAVLVPI LQSAFAKFSL KRAGDFDCLG ASENKSDGFY 0401: EKNGYNSSGS SRNSSISSTS SASSGSGWRM TSRTGDLDAD ADSLTCRQSG LTCNDDRLKM GSKRPRTGMA ESFGQVGIEN DQIGWDWDAD DDDDDREVGM 0501: DIKALLSEFG DFGDFFENDA LPFGEPPGTA ESHVLVFPPD SADVGSSPVD MMDVSDQIVL PVGFSSFESF NPVPPIIDEC LIKSQEVLHS SITSVPSNQM 0601: SISSTGEFDH LLKAEAMMTF APEYGAVEAP MSEISSTFFK SPYLPKSHKV ESSNSRTSNY VYGATPPTTD SDGAGDMILF GSKSCIGNNA GRTLYHSREH 0701: YTQVEGRKGR HDKLPTVISD NSSTKEGVSQ SIHSKHSAAN AVKVVQGKKT DGISAVVSTL LSSKTLLATD VGSVMFQAFM CRMRHIITSS KHSSPVSLTR 0801: LSGNFFLNQL SNEPSTLTDN ISARNEIYKK DIPTRIAGDF DGGMLDSHMS APVGVWRTVS VPKTAKPASS PNIEAGSSLP HSSFSEDSLL SYGQRQPLQD 0901: LLDGIALLVQ QATSFVDLAL DSDCGDGPYG WLALEELWRR ELSCGPSAGH AGCGGTLASC HSLDIAGVKL VDPLSAEVFP SSVITLLQSD IKTALKSAFG 1001: QSDGPLSVTD WCKGRNQSGD GGSISEGFTA ESALSEVNGV NISDDFIIDK YFGKQAVSNA IDGGKGDETA QSQDIYSSEL LRPTLFVLPS PAILVGYQDD 1101: WLKISTNSLT HWEKAPFEPY ALPKSINYAV VCPDIDPLTC AATDFFQQLG TGESTSLSFV KEVMLKHDRN WLGTHLPQSL GNQMEKDVGR LSSSGFVLLD 1201: CPQSMKIESN NTSLLGSLSD YFLSLSNGWN VNSYLKSLSK ALKGLKLGSG LYTNQKEGSG SPCVVVYIVC PFPDPSAVLR TIVESSIALG SVIQSDRDRR 1301: SILNSQVARA FSSSTAVDEA SISHIPVLSG FSVPKLVLQV VSVDSIFRIT SPSFNELVIL KDTAFSVYNK ARRISRGMPN DAFFSSSLPS RSSSALTPMN 1401: SISGIWKDCG GSRMTGSTHP RDGEIDVSLR TSGWDTSTSW QIPRSGGLSC DPNRNGDFYL NDEIFYLFEP LFILSEPGSV ERGVSPTFTS LGSESSKPIP 1501: EDGGRGSGPG MNSMEGITSG SSSQGDVSQL EGKAIPSLHC CYGWTEDWRW LVSIWTDARV LQQGCQILQA CSSPDNGSFK PRDFVITRIG NFFELEYQEW 1601: QKAIYSAGGP EIKKWPIQLR RSAPSGIATN SNGSSLQQQD LSLIQERASS TSTLYSSHSK QSTFVKGSMG QSAGRKQIMG GQTISGTPRG LFQWVHSISF 1701: ASISLDHSLH FVLPAELVSA GGGQSSTGMS SVNYIEGFTP VKSLGSTAFS YMMIPSPNMR FLHPSPLQLP TCLTAESPPL AHLLHSKGYA IPLSTGFVVS 1801: KAVPSMRKDS RINVKEEWPS VLSVSLIDYY GGYDNAHDKI LQGIVKQGGG TKETRDFEVE SHLILESIAA ELHALSWMTV SPAYLDRRTA LPFHCDMVLR 1901: LRRLLHFADK EVSRIPDKTG V |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)