AT1G55310.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SC35-like splicing factor 33 | ||||||||||||
| Curator Summary (TAIR10) |
Encodes a SR spliceosome protein that is localized to nuclear specks, interacts with SR45 and the U1-70K protein of the U1 snRNP, has sequence similar to human SC35 protein. | ||||||||||||
| Computational Description (TAIR10) |
SC35-like splicing factor 33 (SR33); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: SC35-like splicing factor 30A (TAIR:AT3G13570.1). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:20630676..20632695 | ||||||||||||
| Molecular Weight (calculated) | 34729.60 Da | ||||||||||||
| IEP (calculated) | 12.16 | ||||||||||||
| GRAVY (calculated) | -1.58 | ||||||||||||
| Length | 300 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRGRSYTPSP PRGYGRRGRS PSPRGRYGGR SRDLPTSLLV RNLRHDCRQE DLRKSFEQFG PVKDIYLPRD YYTGSHLCTD TCKASRDPRG FGFVQFMDPA 101: DAADAKHHMD GYLLLGRELT VVFAEENRKK PTEMRARERG GGSRFRDRRR TPPRYYSRSR SPPPRRGRSR SRSGDYYSPP PRRHHPRSIS PREERYDGRR 201: SYSRSPASDG SRGRSLTPVR GKSRSLSPSP RRSISRSPRR SRSPSPKRNR SVSPRRSISR SPRRSRSPRR SRRSYTPEPA RSRSQSPHGG QYDEDRSPSQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)