AT1G54940.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.996 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : plant glycogenin-like starch initiation protein 4 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
plant glycogenin-like starch initiation protein 4 (PGSIP4); FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: plant glycogenin-like starch initiation protein 5 (TAIR:AT1G08990.1); Has 1335 Blast hits to 1329 proteins in 289 species: Archae - 0; Bacteria - 103; Metazoa - 257; Fungi - 309; Plants - 506; Viruses - 75; Other Eukaryotes - 85 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:20481690..20484541 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 64712.20 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.40 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.37 | ||||||||||||||||||||||||||||||||||||
| Length | 557 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGTKTHNSRG KIFMIYLILV SLSLLGLILP FKPLFRITSP SSTLRIDLPS PQVNKNPKWL RLIRNYLPEK RIQVGFLNID EKERESYEAR GPLVLKNIHV 101: PLDHIPKNVT WKSLYPEWIN EEASTCPEIP LPQPEGSDAN VDVIVARVPC DGWSANKGLR DVFRLQVNLA AANLAVQSGL RTVNQAVYVV FIGSCGPMHE 201: IFPCDERVMR VEDYWVYKPY LPRLKQKLLM PVGSCQIAPS FAQFGQEAWR PKHEDNLASK AVTALPRRLR VAYVTVLHSS EAYVCGAIAL AQSIRQSGSH 301: KDMILLHDHT ITNKSLIGLS AAGWNLRLID RIRSPFSQKD SYNEWNYSKL RVWQVTDYDK LVFIDADFII LKKLDHLFYY PQLSASGNDK VLFNSGIMVL 401: EPSACMFKDL MEKSFKIESY NGGDQGFLNE IFVWWHRLSK RVNTMKYFDE KNHRRHDLPE NVEGLHYLGL KPWVCYRDYD CNWDISERRV FASDSVHEKW 501: WKVYDKMSEQ LKGYCGLNKN MEKRIEKWRR IAKNNSLPDR HWEIEVRDPR KTNLLVQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)