AT1G54470.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.928 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNI-like superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a Cf-like gene in Arabidopsis that confers downy mildew resistance to several isolates of Peronospora parasitica. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
resistance to Peronospora parasitica 27 (RPP27); LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 14 (TAIR:AT1G74180.1); Has 60601 Blast hits to 25411 proteins in 1007 species: Archae - 24; Bacteria - 5968; Metazoa - 12526; Fungi - 867; Plants - 37950; Viruses - 57; Other Eukaryotes - 3209 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:20344738..20347339 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51661.10 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.25 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.03 | ||||||||||||||||||||||||||||||||||||
| Length | 457 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKTNFVILLL LLCVFAISPS QQEEINQHNP GIYHQKLLYK VQQWRTSLKE SNSVELKLSL AAIVAGVLYF LAALISSACG IGSGGLFIPI TTLVSRLDLK 101: TGKRFLGQYL IWVILLLGQL HECKSCIEKE RVALLDFKKY WMSITQESDL DYVFPTWNND TKSDCCQWES IMCNPTSGRL IRLHVGASNL KENSLLNISL 201: LHPFEEVRSL ELSAGLNGFV DNVEGYKSLR KLKNLEILDL SYNNRFNNNI LPFINAATSL TSLSLQNNSM EGPFPFEEIK DLTNLKLLDL SRNILKGPMQ 301: GLTHLKKLKA LDLSNNVFSS IMELQVVCEM KNLWELDLRE NKFVGQLPLC LGRLNKLRVL DLSSNQLNGN LPSTFNRLES LEYLSLLDNN FTGFFSFDPL 401: ANLTKLKVFK LSSTSDMLQI KTESEPKYQF QLSVVVIRVC SLEKIPSFLV VGKQSGT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)