AT1G54240.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : winged-helix DNA-binding transcription factor family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
winged-helix DNA-binding transcription factor family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Histone H1/H5 (InterPro:IPR005818); BEST Arabidopsis thaliana protein match is: Winged helix-turn-helix transcription repressor DNA-binding (TAIR:AT1G54230.1); Has 110 Blast hits to 110 proteins in 18 species: Archae - 2; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 108; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:20253088..20254494 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 25442.50 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.07 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.49 | ||||||||||||||||||||||||||||
| Length | 229 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVSGDTKSDA NNVTYGDLPS SPAATDSSEP SSYAEQLERL MMIDSEEDRG PSGFTTDELI FQALETVYEN HNGLDVDAIF TFIKERNELQ EDFRERLENQ 101: LRYLVSEGQV YKVGNLYKIP RGVFDTPVVS VGDSNQRETM DPEDSTGTKA QDTPSTCASF APPTTEVDPR IIALAKEVAE AEHLELEAKE AYELADKHAQ 201: LLKLESNITL QLAVEILNRC ANGEKIFLL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)