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AT1G53760.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plasma membrane, plastid, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2343 (InterPro:IPR018786); Has 171 Blast hits to 171 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 127; Plants - 41; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111G7KeggNOG:KOG4539EMBL:AC024260EMBL:AK222210
EMBL:AK229763EMBL:AK230341EMBL:AK230396EMBL:CP002684
EnsemblPlants:AT1G53760EnsemblPlants:AT1G53760.1entrez:841813ExpressionAtlas:Q9C8N0
GeneID:841813GO:GO:0005739GO:GO:0005774GO:GO:0009536
GO:GO:0016020GO:GO:0016021Gramene:AT1G53760.1hmmpanther:PTHR28062
hmmpanther:PTHR28062:SF1InterPro:IPR018786OMA:IIHKKYLPfam:PF10173
PhylomeDB:Q9C8N0Proteomes:UP000006548RefSeq:NP_175779.1STRING:3702.AT1G53760.1
TAIR:AT1G53760TMHMM:TMhelixUniGene:At.37340UniProt:Q9C8N0
Coordinates (TAIR10) chr1:-:20069159..20070918
Molecular Weight (calculated) 30608.20 Da
IEP (calculated) 10.12
GRAVY (calculated) -0.27
Length 272 amino acids
Sequence (TAIR10)
(BLAST)
001: MRARLVVFPI KGKKWCFSRS VDPFAAQSPS GVTPTTVRGL WKKISSESKP INANAELLVD FISDKMNKAW VGLEKAPDGS IKNKIHGFGL KLLARVKPSE
101: IFLKSISKEV TSVQVTYPPS LDPRLVRRRL RHIAMSGTIL HKKYLVGSVT LLPLTSAFMV LPLPNIPFFW VLFRTYSHWR ALQGSEKLLK LISNEANPDK
201: PDSTDDADES KNSNTKPEQK SQSPTCILLP SEELYQLIRE ASEEGLDEAT IIEICKSFDL NKNDVLKYRN LV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)