AT1G53600.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G02750.1); Has 77136 Blast hits to 22764 proteins in 1112 species: Archae - 15; Bacteria - 7068; Metazoa - 10011; Fungi - 1260; Plants - 54670; Viruses - 665; Other Eukaryotes - 3447 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:20001263..20003416 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 80503.80 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.56 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.09 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 717 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVMRPISNKG LIYRHNICLR CNSTLAVSNH EPITQKTRNF LETTTTSTAI FQCNSQISKH ARNGNLQEAE AIFRQMSNRS IVSWIAMISA YAENGKMSKA 101: WQVFDEMPVR VTTSYNAMIT AMIKNKCDLG KAYELFCDIP EKNAVSYATM ITGFVRAGRF DEAEFLYAET PVKFRDSVAS NVLLSGYLRA GKWNEAVRVF 201: QGMAVKEVVS CSSMVHGYCK MGRIVDARSL FDRMTERNVI TWTAMIDGYF KAGFFEDGFG LFLRMRQEGD VKVNSNTLAV MFKACRDFVR YREGSQIHGL 301: VSRMPLEFDL FLGNSLMSMY SKLGYMGEAK AVFGVMKNKD SVSWNSLITG LVQRKQISEA YELFEKMPGK DMVSWTDMIK GFSGKGEISK CVELFGMMPE 401: KDNITWTAMI SAFVSNGYYE EALCWFHKML QKEVCPNSYT FSSVLSATAS LADLIEGLQI HGRVVKMNIV NDLSVQNSLV SMYCKCGNTN DAYKIFSCIS 501: EPNIVSYNTM ISGYSYNGFG KKALKLFSML ESSGKEPNGV TFLALLSACV HVGYVDLGWK YFKSMKSSYN IEPGPDHYAC MVDLLGRSGL LDDASNLIST 601: MPCKPHSGVW GSLLSASKTH LRVDLAELAA KKLIELEPDS ATPYVVLSQL YSIIGKNRDC DRIMNIKKSK RIKKDPGSSW IILKGEVHNF LAGDESQLNL 701: EEIGFTLKMI RKEMELI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)