AT1G53590.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.537 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Calcium-dependent lipid-binding (CaLB domain) family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
NTMC2T6.1; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT3G14590.2); Has 5916 Blast hits to 4916 proteins in 346 species: Archae - 2; Bacteria - 105; Metazoa - 3154; Fungi - 722; Plants - 1160; Viruses - 7; Other Eukaryotes - 766 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:19996556..20000127 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 84906.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.81 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.52 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 751 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MESSLIHHII IVLLLLWFIS SLNRSHAFFY FLALIYLYLV HERYVMRLKR KLQFEERKQA NQRRVLSDSE SVRWMNYAVE KIWPICMEQI ASQKILGPII 101: PWFLEKYRPW TAKKAVIQHL YMGRNPPLLT DIRVLRQSTG DDHLVLELGM NFLAADDMSA ILAVKLRKRL GFGMWTKLHL TGMHVEGKVL IGVKFLRRWP 201: FLGRLRVCFA EPPYFQMTVK PIFTHGLDVA VLPGIAGWLD KLLSIAFEQT LVQPNMLVVD MEKFVSPTSE NWFFVDEKEP VAHVLVEVFE ASDLKPSDLN 301: GLADPYVKGK LGAYRFKTKI QKKTLSPKWH EEFKIPIFTW DSPSILNIEV GDKDRFVDDT LGECSVNIEE FRGGQRNDMW LSLQNIKMGR LHLAITVIED 401: NAKSSDDPLK KAKLNKEDIQ TSFASDTTNL GSFSSDKSPS VVDNFEPIKI DGQEETAIWV QKPGAEVSQI WEPRKGKSRR LDSQIQRTPN DESLSNGSSS 501: TDDNQEGSKN PMKSVGRGLR KIGSMFHRNV KKEEFLIGSI EEESQSQSPR INLKAVNQKD VGLNFIVDDN LSGPLSGKSL DGESLDAEEN SGKGHMKDVA 601: KSFLKQAEKS AKQIKHAFSR KGSMKPRDGH KEIVPESDSG TDSESSDDDD AFTCVKNLAT EPGKLTRDGN IERTGDDDHV DSTTLATAKE DSSGDILEDS 701: TDVEAKEEKL KEAAESETRD MDTAMNIKTE DEKGDTLKNI EEGEEKESSS K |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)