AT1G53340.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.934 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine/Histidine-rich C1 domain family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: intracellular; EXPRESSED IN: hypocotyl, root, stamen; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, RanBP2-type (InterPro:IPR001876), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT2G13900.1); Has 1350 Blast hits to 627 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1341; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:19898928..19900931 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 76889.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.69 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||||||
| Length | 667 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNSNSVGEFR EGEIDGNPFL IYTLLSQTEN PSSREAAVDS DGGTVDDLSV EPLILCPTLR LKVKNLKPYT SDSDRSFFPL VVSSHFPTIQ SGHQQPEYML 101: QSYSCKLPLL PLFWCDNKNP NIYDFICRAC TTIEQGTSYY VCVTCGDQFH KECVGAPLEF KHPFYPSLSL QLYSPPSGRV LCSCCQKPIY GMNYYCPTSN 201: FTLHLFCAFK PIPFVIDHPK RHPHPLTFFP KQSFLPCHVC SLIKKFIPTY ICIRCAFVVH QDCIYFPYVI KISRHHHRIS YTSSLSSGKW SCGVCRQEVD 301: NDYGAYSCNK CDDYFVHSRC ALRRDIWDGI ELEGVPEELE IIVEPFITIS DGIILHFSHG HHLKLDTSKA YDENKLCQAC TLPIYEGGYY SGVDECDFIL 401: HEACANAPCK KYHALNPYPL TLKVVTNEYH DNKGRFRCDA CQRESCGFVY VDDFRGCYAD TKDYKFKIDI RCASVSEPFD YLGHEHPLYL ALNPEEEESA 501: ICHICQESKD ESFSCKKLNC IECDFVICFK CATLPYKARY QHDKHFLKFY EAKEANDHSE WCDVCERRIA DLRKKGFYSC DDCCTTLHID CLLGEDMYMK 601: PGHTIMYNMT GSRKHYQKKL HIHSNNTLSR PFCSECGERC RQKIVFEYKE KYIFCAVSCQ KLVIDYS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)