AT1G53260.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.471 endoplasmic reticulum 0.178 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: cobalt ion binding (TAIR:AT3G15000.1); Has 246 Blast hits to 241 proteins in 32 species: Archae - 0; Bacteria - 2; Metazoa - 7; Fungi - 16; Plants - 212; Viruses - 1; Other Eukaryotes - 8 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:19859406..19860421 | ||||||||||||||||||||
| Molecular Weight (calculated) | 25883.10 Da | ||||||||||||||||||||
| IEP (calculated) | 9.24 | ||||||||||||||||||||
| GRAVY (calculated) | -1.15 | ||||||||||||||||||||
| Length | 230 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKIYSVSHKC YFAFGALVSE DLSHKIKELP KVKWVLPDSY LDGKNKDYGG EPFIDGKAVP YDPKYHEEWI RNNANATNEN RRPRRPRNSD GGRNDRGNQD 101: TGYRRPPPNQ GMGGAPPPPP HIGNNPNMPP HIQPPNMNQN YRGTTTAKHE PELSGTSTAK HEPELSGTST VEHGPELQGT FTAATKHESE LRGTTTTEHE 201: WRMVWKLPAE RWIPTTRSGW WNAATALPTQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)