AT1G53100.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.951 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; FUNCTIONS IN: acetylglucosaminyltransferase activity; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 14 (InterPro:IPR003406), Core-2/I-Branching enzyme (InterPro:IPR021141); BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (TAIR:AT3G15350.2); Has 949 Blast hits to 948 proteins in 119 species: Archae - 0; Bacteria - 46; Metazoa - 553; Fungi - 0; Plants - 316; Viruses - 14; Other Eukaryotes - 20 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:19786990..19788504 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 48169.40 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.50 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||||||||||
| Length | 423 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLLSQDHKIL FNGVRKYVIM EKKYVFSFVI TSLVCVVLLA TSFNIGLMSS LRPPINGTLS SFPKNDSNVV GKQPREDDKL PRFAYLVSGS KGDLESLWRT 101: LRALYHPRNQ YIVHLDLESP VDERSELASR ISNDPMYSKA GNVYMITKAN LVTYTGPTMV ANTLHACAIL LKRTPDWDWF INLSASDYPL VTQDDLIHTF 201: STLDRNLNFI EHTSSLGWKY KKRAMPLIID PGLYMLNKSN VLLVRPNRSL PSAFKLFTAW MALSHAFVEY IIYGWDNLPR TLLMYYTNFV SSPEGYFHTV 301: ICNVPEFSKT AVNHDLHYIA WDKPPRQHPR MLSQRDMGKM ISSGSAFGRK FRRNDTVLDK IDKELLIRIN EDGFTPGGWC GGKPECSVVE DVARIRPSSG 401: AVRLKELVDR LVTEAKLGKN QCV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)