AT1G52950.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.740 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Nucleic acid-binding, OB-fold-like protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Nucleic acid-binding, OB-fold-like protein; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Protein of unknown function DUF223 (InterPro:IPR003871), Replication factor A, C-terminal (InterPro:IPR013955); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT2G05642.1); Has 1159 Blast hits to 1070 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 99; Fungi - 144; Plants - 865; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:19725483..19728007 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 64509.90 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.46 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.48 | ||||||||||||||||||||||||||||||||
| Length | 566 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDEVNPYTAI KNLKPFKTSW CIQVKILHAW NHYTKGSGMS YEMMLADEDG NKIQAGIKKE HLLKLQRYVK IGHWTIIEEF SVTKASGLYR STTHPYRINI 101: QSSTRFSNSP TISDEIWLDL VNFNDVLSGT LDQNKLVNVI GQLVNVGEIQ LLDVQGKPTK KIDFQLRDTD DNRLPCSLWG KFADQIHKVS KESVGGIVIC 201: LIRWAKLGHY KEIRSISNAF DASEVFINPI LTEVEEFKNL LPSDGLALTI MEPKPRFQPL RVREERSKQF ERKTIAELKA SFEVEKVKII CSILSIDLDY 301: SWYYYAHIKC NKKVFKSKKT LSSGAKKIIY RCDKCATDVT SIEARYWLHL DIMDNTGESK LMLFDSFVEP IIGCPATELL DVTNEQIDEP QPLPDVVKNI 401: IGKTYQFLVC VEQDNISRGN DEYKVAEVLT SQNINQALPI NDSVNPVDHS SISSNDQVLM LTNNSEKEDN SQTLSRTPLS KRKEIVDDGS DQSSTSKKQC 501: TKDSDETVTD VTVIDVDNPN DWHEPKFFHK LEEAAQGNLK EVKHEREKIV LKNIKVEKID GKNAPK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)