AT1G52900.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.893 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Toll-Interleukin-Resistance (TIR) domain family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Toll-Interleukin-Resistance (TIR) domain family protein; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Toll-Interleukin-Resistance (TIR) domain family protein (TAIR:AT1G61105.1); Has 1472 Blast hits to 1437 proteins in 74 species: Archae - 2; Bacteria - 52; Metazoa - 24; Fungi - 0; Plants - 1393; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:19702211..19702916 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 22807.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.92 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.16 | ||||||||||||||||||||||||||||||||
| Length | 199 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MISRVFNFMK QSETVQLNNK LFLDLLSSSS SAKPKILHDV FINHRGSDTK RNIATLLYDN LKSRNLRPFL DSKNMKPGDK LFDHINNAIL TSKVAVTVFS 101: PNYCDSYFCL HELALIMESR KRVIPIFCDI KPSQLDVMIE RVTCSDDEIQ RFRWALQEAK DIVGLTFDSY KGNLSEVVTV ASDVIVERLV ELEAKDENL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)