suba logo
AT1G52855.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
mitochondrion 0.737
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15534.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J1JFeggNOG:ENOG410YTQVEMBL:AY086808EMBL:BT025632
EMBL:CP002684EnsemblPlants:AT1G52855EnsemblPlants:AT1G52855.1entrez:2745824
GeneID:2745824Gramene:AT1G52855.1hmmpanther:PTHR33320hmmpanther:PTHR33320:SF2
HOGENOM:HOG000242377KEGG:ath:AT1G52855OMA:KQVCKSKPhylomeDB:Q8LC41
Proteomes:UP000006548RefSeq:NP_974011.1TAIR:AT1G52855UniGene:At.49491
UniProt:Q8LC41
Coordinates (TAIR10) chr1:-:19683137..19683343
Molecular Weight (calculated) 7752.60 Da
IEP (calculated) 9.90
GRAVY (calculated) 0.15
Length 68 amino acids
Sequence (TAIR10)
(BLAST)
1: MVCFCFLVDQ TRKVKRSKPA AGTCSRCGHC ASIADMKTST RFCFIPIYWR SWRAVVCSFC GSVLKSYR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)