AT1G52800.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.970 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G52790.1); Has 6299 Blast hits to 6226 proteins in 763 species: Archae - 0; Bacteria - 707; Metazoa - 49; Fungi - 497; Plants - 4377; Viruses - 0; Other Eukaryotes - 669 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:19664044..19665362 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 35736.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.59 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||||||||||
| Length | 314 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASILKTTKV PILDLTSQQE LKPNTSTWRS VSREACEALE EYGCFLAVYD GVTQQLDDSI FAAAEELFDL PTETKKKNVN EKPYHGYVGQ MPVIPLHEGL 101: GVDYVTNKEI AQRFTHLMWP QGNDRFCNTV HTFSNAVAEL DRLVVRMIFE NYGVEKHYES HVGSKTYLLK FLKYLAPPES ISMPAFPQHT DKTFLSILHQ 201: NDVNGLEVKS KDGEWISLQL PPKSYVVMAG DISMGWSNDR IRSCEHRVTM EGDKTRYTLG LFSFLTDLVS IPEELVDDKH PLMYKPFDNI ALINFYTTKE 301: GREANSTLKA YCGI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)