AT1G52790.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.975 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a putative oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to GS-AOP loci (GI:16118889, GI:16118887, GI:16118891, GI:16118893); contains PF03171 2OG-Fe(II) oxygenase superfamily domain | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: root, synergid; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G52800.1); Has 4044 Blast hits to 3977 proteins in 494 species: Archae - 0; Bacteria - 293; Metazoa - 17; Fungi - 226; Plants - 3128; Viruses - 0; Other Eukaryotes - 380 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:19662194..19663301 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 35706.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.09 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.45 | ||||||||||||||||||||||||||||||||||||
| Length | 310 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSPKIPTLDF SREDLKPGTK YWESTRENIR QALEEYGCFI IDLKDKTPLD LLDRVFGSLV DLFDLPTQTK MKNKYDKPLN GYVGQIPALP LHESLGIDNA 101: TSLEATRSFT GLMWPQGNEH FSECLYKYAE FAAELDQMVT RMVFQSYNVE KYYDPYIEST TYLLRVLKNR APNNENPTLG FVTHTDKSFT TILHQDQVNG 201: LEMETREGER ININLSSPSL FMVVAGDALM AWSNDRVWSP RHQVLVSGET DRYSLGMFAF NNGTLQVPEE LIDHQHPLMY KPFDHLGLLR FYRTDTGYKS 301: ECPIKAYCGF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)