AT1G52580.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.897 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RHOMBOID-like protein 5 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RHOMBOID-like protein 5 (RBL5); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RHOMBOID-like 1 (TAIR:AT2G29050.1); Has 6054 Blast hits to 6053 proteins in 1760 species: Archae - 140; Bacteria - 3757; Metazoa - 520; Fungi - 179; Plants - 346; Viruses - 0; Other Eukaryotes - 1112 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:19587637..19588958 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 34557.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.22 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.30 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 309 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGKRPPIPPD IENGPPPPAR PHFRPPIPVP WVAWLVPLIL AANFVTFATT MYVNDCPARS DECLLFDVLG RLSFQPIKEN MLLGPSIPTL RKLGALERRL 101: VEEGERWRLI SCIWLHGGFL HLMANMISLM CIGMRLEQEF GFMRIGALYV ISGLGGSLVS CLTDSQGERV SVGASGALFG LLGAMLSELI TNWTIYENKC 201: TALMTLILII VLNLSVGFLP RVDNSAHFGG FLAGFFLGFV LLLRPQYGYV NPKYIPPGYD MKHKKSKHKC YQHIFRFTSL AILLAGFIAG YTKLLREHTI 301: QSMPFRDFN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)