AT1G52560.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : HSP20-like chaperones superfamily protein | ||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
HSP20-like chaperones superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to high light intensity, response to hydrogen peroxide, response to heat; LOCATED IN: mitochondrion; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: heat shock protein 21 (TAIR:AT4G27670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:19574783..19575766 | ||||||||
| Molecular Weight (calculated) | 25714.40 Da | ||||||||
| IEP (calculated) | 8.18 | ||||||||
| GRAVY (calculated) | -0.91 | ||||||||
| Length | 225 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MALARLALRN LQQKLSPSLM GQSCERGLVG NRHNPMKLNR FMATSAGEQE DKMNTEVSVS EKKSPRQNFP RRRGRKSLWR NTDDHGYFTP TLNGNTLIQA 101: TENMNRIFDN FNVNPFQLMG QVKEQDDCYK LRYEVPGLTK EDVKITVNDG ILTIKGDHKA EEEKGSPEED EYWSSKSYGY YNTSLSLPDD AKVEDIKAEL 201: KNGVLNLVIP RTEKPKKNVQ EISVE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)