AT1G52490.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT1G32420.1); Has 1577 Blast hits to 1056 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1577; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:19556218..19559011 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59515.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.86 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||||||
| Length | 513 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MARSLRQPPH KLPVFIFHQC DPGTFFTVSS TFSQSTKPKV SIMPGRNHYN AFRYQYVRGF ICCSSSVYDL VTIYNPTTRQ CLPLPKIESM VLSPKRHKHC 101: YFGYDHVMNE YKVLAMVNDS QELTQTFHVF TLGRDCPQWR KIRGNIDYEL ISVSRAGVCI DGTIYYVAVR RKDNENYGEL FMMSFDVKSE RFYHVRTPET 201: LWSPKCTERG LFNHQGKLGC ISSNENNISM WIMENAEKQE WSNITFGLLE YPGGDFRTFS GITPAGEIFK YLRNYFLLPK GLGGVFYGVR PREFSWKRKT 301: EVMRKGNEEK NYREEEYLQL PLDLIVEILK KLPLKSLVRF RCVSKQFSTI ICSLRDFIES VVTRHLAQPG QQLPLLAVFH HCVPETFFTV SSSFSQSLKP 401: AIYNPTTKRS VGLPEIGPPV TGFRKCNCLF GYDPVMDQYK VLSMVFDFRE LTQTFHVFTL GQSQSWRRIQ GINDGKLFPS AVGICIDGTF EFLRFKRDQD 501: CLFCDNETQH III |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)