AT1G52430.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.799 What is SUBAcon? |
|||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Ubiquitin carboxyl-terminal hydrolase-related protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Ubiquitin carboxyl-terminal hydrolase-related protein; FUNCTIONS IN: ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase-related protein (TAIR:AT1G52450.1); Has 246 Blast hits to 212 proteins in 30 species: Archae - 0; Bacteria - 20; Metazoa - 11; Fungi - 4; Plants - 197; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:19531350..19535955 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 129757.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.73 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.31 | ||||||||||||||||||||||||||||||||
| Length | 1136 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MESSSSITEG KPYKDANDHI AKGNYIEALK ILEDLIRIHR EDQNAWLIRI KQGQVFLKLS LETENSDMEF TYLLGSVGCY SEDERLSPFC ANSLHMLANK 0101: LGSLMYYKKC LVKAKLALSV TFQDITDPVV RQIRFNEKQK QILRIIKDAE SKIASPETLV ASTMKQVSKP KVLESEKIPE TRQGVVKRLR SFWVGLDVKV 0201: KRDFMKVNIA KLLSFVERVR YRDGRDVLEN VLASARKDMI WTFWMCCSKR FSSAEECKNH LEEVHAADFK PGTKKDKVQR IGKDWARKIS NGSWEPVDAA 0301: AAVEMIKNQL ADVKAFASKC KNGWSKEWPL AADEERGKLL KEIKLLLVSL CDHKTLSCSV RDWVMYFPVK HLEKLEVSAQ SLVDSLLVET PQSICFLECP 0401: ELNQILDFLN NLKCERNDGA KLVSRAVDSF LDRTRVKENI DFDPQFSYLL LDRRLLKSNN APCDDERTIN VFDPIAHYAK AHAQGDDIIP WLYDNISVDK 0501: IFPKPIREYN LDIWLAVLRA VQFTCRNLET KYTNRKLLLG YVTSLMIIER ICMSEDERRR NLQEDQWIRY ASILCDECEE ILPEISVDRK IFLGAVRDVL 0601: EGALLPPFDV PDLDDCLNLI REQKSCRDDK VLESIGLLTL VVTHKVLLID SKILLIENSR ISLLNNLARL SAFDNRTYIL QLMKPFLLNE IMNMERKAKA 0701: DAVAADLALE EEKKAQSKKK NDKINKQRAS MSKFSPLDQT VEHKPPVNLE LKTVEEDSME PENALASESG PLESSSKTQN QEEATKDGPA EMLDMPKEDS 0801: LSAHSESAIG GAAARYNSAL DMTLKALLNI KVLKEDLKNN TQRFQQVPSA LQHFFNAFVS ESIKTEGVYS CILSDLLSSL EEVISMSSDA AKVVVAILEF 0901: WCCWKNPEGE SLVTRLFTLA ENERMSCRKC RWITNYPEKS SYAIVMPADS IRQLKCAFES MKFVDILKVI RMEYQKSCNI KTGGCGESNF VHHFISRCPP 1001: VFTIVLEWEK SETEKEISET TKALDLELDI SRLYVGLEPN TNYRLVSMVG CGEEEEHFCL AYENNRWVNL GRESLAGEDV SNWKSEVIFF GDFKVNLRQE 1101: SLSGEDDGNW KSVVSFFGER KIRPEILFYE AVGSMA |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)