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AT1G52315.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.991
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Regulator of Vps4 activity in the MVB pathway protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Regulator of Vps4 activity in the MVB pathway protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: Regulator of Vps4 activity in the MVB pathway protein (TAIR:AT1G79910.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YG52eggNOG:KOG2027EMBL:CP002684EnsemblPlants:AT1G52315
EnsemblPlants:AT1G52315.1entrez:2745821GeneID:2745821GO:GO:0015031
Gramene:AT1G52315.1hmmpanther:PTHR12161hmmpanther:PTHR12161:SF14InParanoid:F4ICV8
InterPro:IPR005061KEGG:ath:AT1G52315ncoils:CoilOMA:LIERFCD
PANTHER:PTHR12161PaxDb:F4ICV8Pfam:PF03398PhylomeDB:F4ICV8
PRIDE:F4ICV8ProteinModelPortal:F4ICV8Proteomes:UP000006548RefSeq:NP_974006.1
SMR:F4ICV8STRING:3702.AT1G52315.1TAIR:AT1G52315UniGene:At.51114
UniProt:F4ICV8
Coordinates (TAIR10) chr1:+:19481212..19482674
Molecular Weight (calculated) 40005.90 Da
IEP (calculated) 9.65
GRAVY (calculated) -0.64
Length 347 amino acids
Sequence (TAIR10)
(BLAST)
001: MFLRCFKPKF YKKSKSTTSY MKIRIDIVRR KRIAMVRNYK TDIVNFLKNG QDSEAYRRAE LLLEELRIIS CYDLIERFCD CISENLSLML KKRECPEECR
101: EAVSSLIYAT AWVPDVPELK DLRAVFTKRF GNFIASSVNH ELVEKTELLR PPSRELKIQT VKDVANEFSI NWDPTPLKLM LLRETSALQI KDKVETRADY
201: LNKDTEKSFM DEHSDDESVL SESWRIDSLS KGSLSSSSSS SSSSLRRVSV RKKKGKKILP YGIISSPDTK LGAGNDEKAQ EEKEEKRKIA DQENSRLLGI
301: QGSRSLTSTS NNEVSTIREN ERMSSFQRPN LLDYDDVVAR LAALRRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)