AT1G52130.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 0.996 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Mannose-binding lectin superfamily protein | ||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Mannose-binding lectin superfamily protein; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: Mannose-binding lectin superfamily protein (TAIR:AT1G52120.1); Has 1505 Blast hits to 643 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1504; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:19400619..19402363 | ||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 53571.70 Da | ||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.44 | ||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.45 | ||||||||||||||||||||||||||||||||||||
Length | 483 amino acids | ||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MTQKLESVGS ERKSSEYMWD DGSEHDDVTK IYVRGGTKGI EFIKFGYVKA GELLDGSFHG YSDTGFTQMF EIDHRKNEHL LSVEGYFDYY NDIMYAIQFK 101: TNLKISEIMG YEYSGHKFTL AMEGKKIIGF HGFADVNLRA LGAYVTWITP ARMEAKGGKG GNEWDDGGDY EAVTKIHGRS DHKGIKDIIF DYVDKDGHPK 201: SETHGPTSGQ GYVLEPFEIN HLDKEYLMSI DGYYDDASGV IQALQFKTNM KTSELMGYYD DDAVKFTIGC TVNKIIGFHG HAGKNLYSLG AYFTTLPLTK 301: LEYEDSFREK LPKNGASGNL WDDGSFQGVK KVHIYYDGYS VRCVRFDYDD DGKVESREHG PKIVAAVQEG GFVLDYPNEV ITSVEGIATV VNTGLSFSTG 401: NVMIKSLTFK TSKGRTSPTF GNVFGNYLSE FKLESQGCAI VGFHGRSSYN SIHGLGAYFF PMPPSHDGKA LEEQGGDGGL GGV |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)