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AT1G52130.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.996
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Mannose-binding lectin superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Mannose-binding lectin superfamily protein; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: Mannose-binding lectin superfamily protein (TAIR:AT1G52120.1); Has 1505 Blast hits to 643 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1504; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
EMBL:AC006216EMBL:CP002684EnsemblPlants:AT1G52130EnsemblPlants:AT1G52130.1
entrez:841643Gene3D:2.100.10.30GeneID:841643GO:GO:0030246
Gramene:AT1G52130.1hmmpanther:PTHR23244hmmpanther:PTHR23244:SF208HOGENOM:HOG000015149
InParanoid:Q9ZU13InterPro:IPR001229KEGG:ath:AT1G52130PaxDb:Q9ZU13
Pfam:PF01419Pfam:Q9ZU13Pfscan:PS51752PhylomeDB:Q9ZU13
PIR:C96561PRIDE:Q9ZU13PRO:PR:Q9ZU13PROSITE:PS51752
ProteinModelPortal:Q9ZU13Proteomes:UP000006548RefSeq:NP_175625.1SMART:SM00915
SMR:Q9ZU13SUPFAM:SSF51101TAIR:AT1G52130UniGene:At.52152
UniProt:Q9ZU13
Coordinates (TAIR10) chr1:-:19400619..19402363
Molecular Weight (calculated) 53571.70 Da
IEP (calculated) 5.44
GRAVY (calculated) -0.45
Length 483 amino acids
Sequence (TAIR10)
(BLAST)
001: MTQKLESVGS ERKSSEYMWD DGSEHDDVTK IYVRGGTKGI EFIKFGYVKA GELLDGSFHG YSDTGFTQMF EIDHRKNEHL LSVEGYFDYY NDIMYAIQFK
101: TNLKISEIMG YEYSGHKFTL AMEGKKIIGF HGFADVNLRA LGAYVTWITP ARMEAKGGKG GNEWDDGGDY EAVTKIHGRS DHKGIKDIIF DYVDKDGHPK
201: SETHGPTSGQ GYVLEPFEIN HLDKEYLMSI DGYYDDASGV IQALQFKTNM KTSELMGYYD DDAVKFTIGC TVNKIIGFHG HAGKNLYSLG AYFTTLPLTK
301: LEYEDSFREK LPKNGASGNL WDDGSFQGVK KVHIYYDGYS VRCVRFDYDD DGKVESREHG PKIVAAVQEG GFVLDYPNEV ITSVEGIATV VNTGLSFSTG
401: NVMIKSLTFK TSKGRTSPTF GNVFGNYLSE FKLESQGCAI VGFHGRSSYN SIHGLGAYFF PMPPSHDGKA LEEQGGDGGL GGV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)