AT1G52000.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Mannose-binding lectin superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Mannose-binding lectin superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: myrosinase-binding protein 1 (TAIR:AT1G52040.1); Has 167771 Blast hits to 59831 proteins in 3132 species: Archae - 576; Bacteria - 64709; Metazoa - 36025; Fungi - 10183; Plants - 11804; Viruses - 2110; Other Eukaryotes - 42364 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:19333352..19335700 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 73943.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.79 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.74 | ||||||||||||||||||||||||||||||||||||||||
| Length | 730 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSWDDGKHTK VKRVQLTFDD VIRSIEVEYD GTSLKSQPRG TAGTKIDGFT LSSDEYITEV NGYYKTTFSG EVITSLTFKT NKRTYGTYGN KTSSYFSVAA 101: PKDNQIVGFL GSSSHALNSI DAHFAPAPPP GSTGAKPGAS GIGSDSGSIG SAGTNPGADG TRETEKNAGG SKPSSGSAGT NPGASAVGNG ETEKNAGGSK 201: PSSGSAGTNP GASAGGNGET EKNVGGSKPS SGKAGTNPGA NAGGNGGTEK NAGGSKSSSG SARTNPGASA GGNGETVSNI GDTESNAGGS KSNDGANNGA 301: SGIESNAGST GTNFGAGGTG GIGDTESDAG GSKTNSGNGG TNDGASGIGS NDGSTGTNPG AGGGTDSNIE GTENNVGGKE TNPGASGIGN SDGSTGTSPE 401: GTESNADGTK TNTGGKESNT GSESNTNSSP QKLEAQGGNG GNQWDDGTDH DGVMKIHVAV GGLGIEQIRF DYVKNGQLKE GPFHGVKGRG GTSTIEISHP 501: DEYLVSVEGL YDSSNIIQGI QFQSNKHTSQ YFGYEYYGDG TQFSLQVNEK KIIGFHGFAD SHLNSLGAYF VPISSSSSSL TPPPNKVKAQ GGSYGETFDD 601: GAFDHVRKVY VGQGDSGVAY VKFDYEKDGK KETQEHGKMT LSGTEEFEVD SDDYITSMEV YVDKVYGYKS EIVIALTFKT FKGETSPRFG IETENKYEVK 701: DGKGGKLAGF HGKASDVLYA IGAYFIPAAN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)