AT1G51480.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.945 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (CC-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: apoptosis, defense response; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing protein (InterPro:IPR015766), NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G43730.1); Has 15938 Blast hits to 15091 proteins in 593 species: Archae - 10; Bacteria - 511; Metazoa - 1779; Fungi - 142; Plants - 13275; Viruses - 0; Other Eukaryotes - 221 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:19090847..19094306 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 107380.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.29 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.11 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 941 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVQHWDGDPA VRTKSHIEML HPACEMSWNL KQHDDTAASL MVIQSPTSDP VFNPVHTIKQ FGERYTQDFV IRERDKSFGV LIHCFCKMAD WLLLIPWNKI 101: FTAACGCFFS DRNYIHKMEA NLDDLHTTME ELKNGRDDLL RRVSIEEDKG LQQLAQVKGW ISRVEIVESR FKDLLEDKST ETGRLCLFGF CSENCISSYN 201: YGEKVMKNLE EVKELLSKKH FEVVAHKIPV PKVEEKNIHT TVGLYAMVEM AWKSLMNDEI RTLCLHGMGG VGKTTLLACI NNKFVELESE FDVVIWVVVS 301: KDFQLEGIQD QILGRLRLDK EWERETENKK ASLINNNLKR KKFVLLLDDL WSEVDLNKIG VPPPTRENGA KIVFTKRSKE VSKYMKADMQ IKVSCLSPDE 401: AWELFRITVD DVILSSHEDI PALARIVAAK CHGLPLALIV IGEAMACKET IQEWHHAINV LNSPAGHKFP GMEERILLVL KFSYDSLKNG EIKLCFLYCS 501: LFPEDFEIEK EKLIEYWICE GYINPNRYED GGTNQGYDII GLLVRAHLLI ECELTTKVKM HYVIREMALW INSDFGKQQE TICVKSGAHV RMIPNDINWE 601: IVRQVSLIST QIEKISCSSK CSNLSTLLLP YNKLVNISVG FFLFMPKLVV LDLSTNMSLI ELPEEISNLC SLQYLNLSST GIKSLPGGMK KLRKLIYLNL 701: EFSYKLESLV GISATLPNLQ VLKLFYSNVC VDDILMEELQ HMDHLKILTV TIDDAMILER IQGIDRLASS IRGLCLTNMS APRVVLSTTA LGGLQQLAIL 801: SCNISEIKMD WKSKERREVS PMEIHPSTST SSPGFKQLSS VNIMKLVGPR DLSWLLFAQN LKSLHVGFSP EIEEIINKEK GSSITKEIAF GKLESLVIYK 901: LPELKEICWN YRTLPNSRYF DVKDCPKLPE DIANFPMHAE E |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)