AT1G51270.4
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.553 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : structural molecules;transmembrane receptors;structural molecules | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
structural molecules;transmembrane receptors;structural molecules; FUNCTIONS IN: transmembrane receptor activity, structural molecule activity; INVOLVED IN: signal transduction, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G45000.1). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:19007577..19011225 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 53417.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.26 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||||||||||||||
| Length | 467 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSTDELLTFD HVDIRFPIEL NKKVSCSLNL TNKTENYVAF KAKTTNAKKY YVRPNVGVVL PRSSCEVLVI MQALKEAPAD MQCRDKLLFQ CKVVEPETTA 101: KDVTSEMFSK EAGHPAEETR LKVMYVTPPQ PPSPVQEGTE EGSSPRASVS DNGNASEAFV DMLRSLLVPL FSNAASSTDD HGITLPQYQV FINFRGDELR 201: NSFVGFLVKA MRLEKINVFT DEVELRGTNL NYLFRRIEES RVAVAIFSER YTESCWCLDE LVKMKEQMEQ GKLVVVPVFY RLNATACKRF MGAFGDNLRN 301: LEWEYRSEPE RIQKWKEALS SVFSNIGLTS DIRSNESKFV DSIVEEVKKV LIKIADNFFK DHLPWKFPRL TLTDGTTIYI KRSYFVGFLV QETANVSLDD 401: HDLRDSPLVT NYVCFTTPIN DLLKFHTLLI SLSHKVSSKV HHSSLFFATM YLFEFESFTF IVWLSPT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)