AT1G51130.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Nse4, component of Smc5/6 DNA repair complex | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Nse4, component of Smc5/6 DNA repair complex; CONTAINS InterPro DOMAIN/s: Nse4 (InterPro:IPR014854); BEST Arabidopsis thaliana protein match is: Nse4, component of Smc5/6 DNA repair complex (TAIR:AT3G20760.1); Has 297 Blast hits to 295 proteins in 132 species: Archae - 0; Bacteria - 0; Metazoa - 72; Fungi - 132; Plants - 74; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:18939480..18941560 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 45084.50 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.43 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.71 | ||||||||||||||||||||||||||||||||||||||||
| Length | 403 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRKTVKRESE ATGGKREADD EPEKLRSVKK EKQRKTEADS VRPDEPPPPQ EEEQGISDRR ILRSKYLSLQ NEINDCKDDL MKIDSDKFSR IINAVENLHQ 101: QVRKPREQIA DAEALLDIAN TLMSSVKSQS AHGVSPAEFV NALISGFGQG SLGIDTDETA QVSLKWKDLG FAVCSTVLVS CGCSTMLGPM DTELKQRKRA 201: PNRKRTKPGE GVRPDEVDDS QSEEKTDTDK NMTIMFNILG KKKRVQLENL VLNRRSFAQT VENLFALSFL AKDGRVEIIV DKSGSHFAMP RNAPDANVVM 301: SGEVIYNHFV FRLDFKDWKL MSEMVPLGEE LMPHRQTAVA SSSCPAASAP ASADFTQDTQ TTPIRKLSRN RGLVVQEETV VEDTPDKEGD GTRRRCKRRL 401: TSS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)