AT1G50790.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.960 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Plant mobile domain protein family | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Plant mobile domain protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Aminotransferase-like, plant mobile domain (InterPro:IPR019557); BEST Arabidopsis thaliana protein match is: Aminotransferase-like, plant mobile domain family protein (TAIR:AT1G50820.1); Has 578 Blast hits to 565 proteins in 32 species: Archae - 2; Bacteria - 2; Metazoa - 14; Fungi - 6; Plants - 524; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:18824050..18826488 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 91491.60 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.01 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.53 | ||||||||||||||||||||||||||||
| Length | 812 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASPTENSNR SSSSKKPHLL KPCLTSINES QAHLCQKRSA PSPDLEALST SVTFWGWRYP HNKFNSWARK MSALHEPIWR KAGIFEAILA STYKIFKNTD 101: LVMGIAEKWC PDTNTFVFSW GEATITLEDV MVLLGFSVLG SPVFATLDSS GKEIMAKLGK EWLKIKKDKG TFVTQIAWIE RFMDSGDELE HLAFLVLWLS 201: YFVFPTRYYH IYEAIWPIAI HLSNGTKMAL APAVLAHLYA DLSLLKNHIT ALSESPIKVE IDLSSLCKLV NVWIWERFRA LQSKPNLLLK GEPRLALWND 301: LKQRTSNAKR ILNNSKIDGF EWCPYTKTVK NWDFPQFYPE KATWVTLVPN RDDEFISFAR CIMVSQLVGI DSLEHYYPNR VASQFGRLQD VHCPVNRNNL 401: SREAAWNDYY KPLDDLELYI PSRSAISCDT PMFCDSWRKR VVGSAKTLRT SIGDDTSFVP SGSKMNRRSE DGRKIAEDST KKRLKFMKSA RKNDGSTMGQ 501: KQVISDDADD DDSLTVAQIT TLYKKKYSEN SGGNASEPLG KKIRLEADNN GLEPCQKLSS IRYDGDETVP PPEIKKRNEE TGSKSGMRVV LSPFDESNSS 601: KPPVDFGRAI DIVVSAPETM TFCDDVYGNN AEKKTMIDDD SEELKCLLHE DGTITREMAR SDKKCCSEAE KEDADGGISD KVLASKADNK KSIPYQKLAS 701: GCANGDETSK AYKPKVLKRS DGNQAHACLL PDDGIRSEET MKSNEQLKVF EKRNNDLGEG DVDNDTTEKR SQKLNVLALS IEERVLKAER TVAWLNQRRA 801: IKQRKVAAAG LS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)