AT1G50780.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.955 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : 2Fe-2S ferredoxin-like superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
2Fe-2S ferredoxin-like superfamily protein; FUNCTIONS IN: electron carrier activity, iron-sulfur cluster binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Ferredoxin (InterPro:IPR001041), 2Fe-2S ferredoxin, iron-sulphur binding site (InterPro:IPR006058), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); BEST Arabidopsis thaliana protein match is: MADS-box transcription factor family protein (TAIR:AT1G48150.1); Has 115 Blast hits to 115 proteins in 29 species: Archae - 0; Bacteria - 2; Metazoa - 5; Fungi - 9; Plants - 87; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:18821267..18823077 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 36558.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.03 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.58 | ||||||||||||||||||||||||||||||||||||
| Length | 323 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MESRLSLFIM KQTILYLISI PYSDVNNFVG VLRYQTSFKS VKLSCGEGGC GACVVLLSNQ HSRFVTSPDE NSDVVYSFSG YSHASEIVDC YLNGKSPPKT 101: TINPESSKFW WEDPNLYGDC DDLSELRIIE DRLMRTKKHL MDCLEKKEKS YSVSKSDQNP KNNGGSSSSS SSSSSQIASD FGQNPSTSSP FFDHHSYSSL 201: EPSSQVTTCF DQNPIFSVGS ESSSDQFRYL VNEDAGFVDC LFETEEEKNR MIVPQETQTQ PMFSEEDQSF WENLDVDDVF GLFNDDTNLE VPLQDHSSTN 301: EEDEFMIDIS EYLSEEAMEW PMF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)