AT1G50470.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 0.998 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : F-box associated ubiquitination effector family protein | ||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
F-box associated ubiquitination effector family protein; CONTAINS InterPro DOMAIN/s: F-box associated domain, type 1 (InterPro:IPR006527); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT3G17560.1); Has 247 Blast hits to 247 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 247; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:18700000..18700444 | ||||||||||||||||||||
Molecular Weight (calculated) | 13623.50 Da | ||||||||||||||||||||
IEP (calculated) | 4.80 | ||||||||||||||||||||
GRAVY (calculated) | -0.05 | ||||||||||||||||||||
Length | 121 amino acids | ||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MEEFLDVVSP EDDLVSTGKS LKGNEVNDIK ALSVVREEHL SLLYQSAKKL KMDIRVTNEI ETVDLKPHGC LFSSSLSFHI DEEKKVAVCG EKVIYNKIYI 101: VGEDKYTRYI DLLVSVALMV G |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)